BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZB06FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1543 829 0.0
3x_Contig1430 442 e-124
>3x_Contig1543
Length = 9648
Score = 829 bits (418), Expect = 0.0
Identities = 434/438 (99%), Gaps = 1/438 (0%)
Strand = Plus / Minus
Query: 88 catatctaagcccaaatgacccacagagtaaccaggcacacgataatctagagcagcaat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catatctaagcccaaatgacccacagagtaaccaggcacacgataatctagagcagcaat 382
Query: 148 tacaatcctttgagaagtttgtggaaacggtcactgttcaagatgtgcttacgaatgttt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacaatcctttgagaagtttgtggaaacggtcactgttcaagatgtgcttacgaatgttt 322
Query: 208 cctctttgaagttcttttcggcattccttgaaccacaaacagatcaatcaggaataattg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctctttgaagttcttttcggcattccttgaaccacaaacagatcaatcaggaataattg 262
Query: 268 ctttacagctgtggtcctttatc-gaaaggaaacggaatccgttagaagatatatctaat 326
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttacagctgtggtcctttatctgaaaggaaacggaatccgttagaagatatatctaat 202
Query: 327 gatgagatacaaattgatacttccaaaaatggcaataaacatttaagagaacttgagcaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatgagatacaaattgatacttccaaaaatggcaataaacatttaagagaacttgagcaa 142
Query: 387 caatttttcagctctcctatttctcgagcacacattgaggaattggattctaatagcgtc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 caatttttcagctctcctatttctcgagcacacattgaggaattggattctaatagcgtc 82
Query: 447 aaaacgattattgattttttgaaggaaagggatgatactccttccgtaacagagtcacag 506
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 81 aaaacgattattgattttttgaaggaaagggatgatactccttccgtaatagagtcatac 22
Query: 507 tttgacaaatcagtagag 524
||||||||||||||||||
Sbjct: 21 tttgacaaatcagtagag 4
>3x_Contig1430
Length = 7411
Score = 442 bits (223), Expect = e-124
Identities = 248/254 (97%), Gaps = 2/254 (0%)
Strand = Plus / Minus
Query: 652 ataatatagccactcaagcgtcaaatactttgaacaatgattttccaacggacaccgtga 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7411 ataatatagccactcaagcgtcaaatactttgaacaatgattttccaacggacaccgtga 7352
Query: 712 gggtaatcacacatggtagatttaggcaaagcgttagatgacattttaaacaataacgat 771
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 7351 gggtaatcacacatggta-atttaggcaaagcgttagatgacattttaaacaataacgat 7293
Query: 772 gtgagcaccaccgatgctatttcaagtttgaaaactactaaaaaatcgtactctaatatt 831
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 7292 gtgagcaccaccgatgctatttcaagtttgaaaactcctaagaaatcgtactctaatatt 7233
Query: 832 ttccgtgcgcgagagaaatctttgtncgatgatgaactatttggagatacctccgtacaa 891
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 7232 ttcggtgcgcgagagaaatctttgttcgatgatgaactatttggagatacctccgtacaa 7173
Query: 892 ga-gacgaagaaac 904
|| |||||||||||
Sbjct: 7172 gaggacgaagaaac 7159
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6607
Number of Sequences: 1807
Number of extensions: 6607
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 2
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)