BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZB07FM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1731 1463 0.0
>3x_Contig1731
Length = 24233
Score = 1463 bits (738), Expect = 0.0
Identities = 804/817 (98%), Gaps = 7/817 (0%)
Strand = Plus / Plus
Query: 82 agactagtgggaacccgttgttggaacctgttgacatgagagagcaaaacagtggttatt 141
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3499 agactagtgagaacccgttgttggaacctgtttacatgagagagcaaaacagtggttatt 3558
Query: 142 attggctagggtaactccatcttctcttctcgcctagaacactatgataacaaacttgtc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3559 attggctagggtaactccatcttctcttctcgcctagaacactatgataacaaacttgtc 3618
Query: 202 tattttaagagcgaatgcgttgtcagaacaatgaatagaatgagacttctttgatttttt 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3619 tattttaagagcgaatgcgttgtcagaacaatgaatagaatgagacttctttgatttttt 3678
Query: 262 tcagaaagcttttccatgcattggaattgacacgtatattcctatgccgatggatcccaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3679 tcagaaagcttttccatgcattggaattgacacgtatattcctatgccgatggatcccaa 3738
Query: 322 ttcaatgcctctcgaacaaacggtacataacccaactggcattgcaacagcacgatgagt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3739 ttcaatgcctctcgaacaaacggtacataacccaactggcattgcaacagcacgatgagt 3798
Query: 382 taattatatacctactacattcagaagtaacaactcctacgcaaaaatcttgcacctcgc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3799 taattatatacctactacattcagaagtaacaactcctacgcaaaaatcttgcacctcgc 3858
Query: 442 ttgatcgcccagtcacacagcagatgcagcgtttctgcaaaaacaggaatttaaacgggc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3859 ttgatcgcccagtcacacagcagatgcagcgtttctgcaaaaacaggaatttaaacgggc 3918
Query: 502 acagcatcggatcccaggattcatgattaaacggttacttgcttacatacacttccaaat 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3919 acagcatcggatcccaggattcatgattaaacggttacttgcttacatacacttccaaat 3978
Query: 562 ttaacttgctcttgctagcgaaattccattgatttcattaaagttctcagtattaattgc 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3979 ttaacttgctcttgctagcgaaattccattgatttcattaaagttctcagtattaattgc 4038
Query: 622 ctttcagaacatccttcgaattatggaacatggaacaaaaaaaaaaagatccagtcctcc 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4039 ctttcagaacatccttcgaattatggaacatggaacaaaaaaaaaaagatccagtcctcc 4098
Query: 682 tagtcatttatatagaaaacagaatatatacagcagacagaaatcagtttctgaaatttt 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4099 tagtcatttatatagaaaacagaatatatacagcagacagaaatcagtttctgaaatttt 4158
Query: 742 aaggtatattgtttacacagcacacgnagcatagcaacaactacacaagatattattttg 801
|||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||
Sbjct: 4159 aaggtatattgtttacacagcacacggagcaaagcaacaactacacaagata-tattttg 4217
Query: 802 ggtagaccccgcaataggacacccaggaacatttgtgttagtgggtatacagaaatcagt 861
|||||| |||||||||||||||||||| ||| ||||| |||||||||||||| ||||||
Sbjct: 4218 ggtaga-cccgcaataggacacccagg-acagttgtg-tagtgggtatacag-aatcagg 4273
Query: 862 ttattgataaaggagaatcaacgaacgcctatttttt 898
||||||||||| ||||||||| |||||||||||||||
Sbjct: 4274 ttattgataaa-gagaatcaa-gaacgcctatttttt 4308
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,661
Number of Sequences: 1807
Number of extensions: 11661
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)