BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZB07RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1742 1251 0.0
>3x_Contig1742
Length = 17167
Score = 1251 bits (631), Expect = 0.0
Identities = 801/850 (94%), Gaps = 6/850 (0%)
Strand = Plus / Minus
Query: 49 tctcgtcctagcgttttatattcctccaatgatgttgtctcgtttagaagctgtctcaac 108
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 10964 tctcgtcctagcgttttaaattcctccaatgatgttgtctcgtttagaagctgtctcaac 10905
Query: 109 aatgcaatcttatctacgccaggtagatttaacttatcaacaatgctttgaacgtattga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10904 aatgcaatcttatctacgccaggtagatttaacttatcaacaatgctttgaacgtattga 10845
Query: 169 acagcatgtttctttgaacaatatttgcttcttgaattggcatcacactttgtatagcat 228
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 10844 acagcatgtttctttgaacaatatttgcttcttgaattggcatcacactctgtatagcat 10785
Query: 229 tcagggagcctgcattttctcttccaaagagttttcggtagtttgccgccatttatcaat 288
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10784 tcagggagcctgcatttcctcttccaaagagttttcggtagtttgccgccatttatcaat 10725
Query: 289 gccggtcctgtaattccagcactacaatacgaacagtagaatgaaaaaacgagatctcta 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10724 gccggtcctgtaattccagcactacaatacgaacagtagaatgaaaaaacgagatctcta 10665
Query: 349 tatttctcggggatctttaaacaggaaaaatgaaaccaatcatcacatccatcacatcct 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10664 tatttctcggggatctttaaacaggaaaaatgaaaccaatcatcacatccatcacatcct 10605
Query: 409 accatcaactccccagtgtctggtttcttacatatacaataaacttcttccccagttttt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10604 accatcaactccccagtgtctggtttcttacatatacaataaacttcttccccagttttt 10545
Query: 469 gggtcgtgtttcctgctgacatacctggggcaccaactaggtaatgacatcgagaatact 528
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 10544 gggtcgtgtttcctgctgtcatacctggggcaccaactaggtaatgacatcgtgaatact 10485
Query: 529 gtaaattcaatcctatactggagttatcttatgatgataaatatctaggcagaaaaaatg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10484 gtaaattcaatcctatactggagttatcttatgatgataaatatctaggcagaaaaaatg 10425
Query: 589 aagtatattctttgtaatattcatatgcaaccattcatgtacccttcacaggccatattn 648
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 10424 aagtatattctttgtaatattcaaatgcaaccattcatgtacccttcacaggccatattt 10365
Query: 649 ggggtatttctctgttta-tttaccctcatcgattcgtgtaatggttttcaca-ttaaat 706
| | |||||||||||||| |||||| ||||||||||||||||||||||| ||| || |||
Sbjct: 10364 gtgttatttctctgtttattttaccttcatcgattcgtgtaatggtttttacattttaat 10305
Query: 707 attccttttctga-gccatgtgtaaagatgggatgtaatgaatagccccac-tttaatta 764
||||||||||||| || |||||||||||||| |||||||||||| || || | |||||
Sbjct: 10304 attccttttctgatgcaatgtgtaaagatggaatgtaatgaataagccaacatcaaatta 10245
Query: 765 a-aaaccgatttcccaagatcttcagaaatatcacttgcccctttgatttttacaacagg 823
| |||| ||| | ||||||| |||||||||||||||| |||||||| | | |||| |
Sbjct: 10244 agaaacagatataccaagattctcagaaatatcacttg-ccctttgagtatatgaacaag 10186
Query: 824 ggcgagaatcgctgacttttaaatgaaaaacttcatgattgttgcaaatatgaccccgtt 883
||| || |||||||||| ||| ||| ||||||||||| || ||| || |||| |||||
Sbjct: 10185 tgcgtgattcgctgacttataattgataaacttcatgactgctgcgaaattgacaccgtt 10126
Query: 884 gaaacccatt 893
||| ||||||
Sbjct: 10125 gaagcccatt 10116
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7001
Number of Sequences: 1807
Number of extensions: 7001
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)