BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZB08FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1777 1584 0.0
>3x_Contig1777
Length = 26319
Score = 1584 bits (799), Expect = 0.0
Identities = 844/854 (98%), Gaps = 4/854 (0%)
Strand = Plus / Minus
Query: 87 cgcgaagcaattcaagaaacacaacagagatacattcatcaatgcagttgaaaccttaca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22793 cgcgaagcaattcaagaaacacaacagagatacattcatcaatgcagttgaaaccttaca 22734
Query: 147 agactgtttgaaacctgtgacactagtcgtccaagaaagcattttgccaattttagacag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22733 agactgtttgaaacctgtgacactagtcgtccaagaaagcattttgccaattttagacag 22674
Query: 207 tttgttcacatttattcaattgaaaactgctacccaaattgagaatgttgtaaaatgtga 266
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22673 tttgttcacattcagccaattgaaaactgctacccaaattgagaatgttgtaaaatgtga 22614
Query: 267 tgacgaggctgccaatgttcttcagtcattaaaagaagatacaacattgatatatctggt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22613 tgacgaggctgccaatgttcttcagtcattaaaagaagatacaacattgatatatctggt 22554
Query: 327 tgatgtacgaacagaactcaacattaatgacataattttgaacacgataaatgagcttca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22553 tgatgtacgaacagaactcaacattaatgacataattttgaacacgataaatgagcttca 22494
Query: 387 gatatctaaacctaatgtgatttcagttacatacaatgacagaagtgaagaattggggct 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22493 gatatctaaacctaatgtgatttcagttacatacaatgacagaagtgaagaattggggct 22434
Query: 447 ggtacgagattatctgcgagaacttgttagagtgccgctaacattggttaagtggcatgt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22433 ggtacgagattatctgcgagaacttgttagagtgccgctaacattggttaagtggcatgt 22374
Query: 507 gctacctacagaaagtttggatgaaaacatattggactgcaagttgttattgacttcaga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22373 gctacctacagaaagtttggatgaaaacatattggactgcaagttgttattgacttcaga 22314
Query: 567 gggaatcaacatgtattatccgtcagatccgtattttagaagtgcatctatcaatattct 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22313 gggaatcaacatgtattatccgtcagatccgtattttagaagtgcatctatcaatattct 22254
Query: 627 tcttgataacctatcgaatgttttactgtcaattcttgacaaagagaacatcacaatttc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22253 tcttgataacctatcgaatgttttactgtcaattcttgacaaagagaacatcacaatttc 22194
Query: 687 gaaaagtttagcattangagataatagcaggcggttagtggatattgtgaaacaacggat 746
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22193 gaaaagtttagcattaggagataatagcaggcggttagtggatattgtgaaacaacggat 22134
Query: 747 ggctattagagatactgccgagacccagtttattaaaaacgccaaatttgggaaattaaa 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22133 ggctattagagatactgccgagacccagtttattaaaaacgccaaatttgggaaattaaa 22074
Query: 807 atcaggggcacaggaacgacctcattgtgtttgaacgaagtgtcgataccattacttcaa 866
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 22073 atcagggg-aaaggaacgacctcattgtgtttgaacgaagtgtcgataccattactccaa 22015
Query: 867 tgatgggcagatctaacatattcagggaatc-tgtctgaagtggatcagatatcaaacgt 925
|||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 22014 tgat-ggcagatctaacatattca-ggaatcttgtctgaagtggatcagatatcaaacgt 21957
Query: 926 tccaaaggatggag 939
||||||||||||||
Sbjct: 21956 tccaaaggatggag 21943
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6846
Number of Sequences: 1807
Number of extensions: 6846
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)