BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZB08RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1075 1429 0.0
>3x_Contig1075
Length = 3835
Score = 1429 bits (721), Expect = 0.0
Identities = 864/899 (96%), Gaps = 10/899 (1%)
Strand = Plus / Minus
Query: 47 tactctcaa-attagctgttacgcaggatatgtcactttc-atgtgcgaagcgtctcttc 104
||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 892 tactctcaatattagctgtaacgcaggatatgtcactttccatgtgcgaagcgtctcttc 833
Query: 105 tggagttgaggatggtggtaagttgtataaaaggtttgtcaatattggctcgtatacctt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 tggagttgaggatggtggtaagttgtataaaaggtttgtcaatattggctcgtatacctt 773
Query: 165 ttgtagcccggtatccttgaaattaaaattatatgtatctcgcttgtttttttttgattc 224
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 772 ttgtagcccggtatccttgaaattaaaattatatgtatctcgcttgttcaacactgattc 713
Query: 225 tagtaatgtgcagagcaacataattccataaactctcacattttctggccctaatgtagt 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 tagtaatgtgcagagcaacataattccataaactctcacattttctggccctaatgtagt 653
Query: 285 gtcatcaattatattaagtattcctggacttatccagggtaggtttgcagaaatttcctg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gtcatcaattatattaagtattcctggacttatccagggtaggtttgcagaaatttcctg 593
Query: 345 cttccctaagtgtctcaaaataatataaaataacccaatacttcgtaatccaccattagt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cttccctaagtgtctcaaaataatataaaataacccaatacttcgtaatccaccattagt 533
Query: 405 cctccattctttccatcttgattcaccaaacgtttgttcaaagcctaatcttggctgtag 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 cctccattctttccatcttgattcaccaaacgtttgttcaaagcctaatcttggctgtag 473
Query: 465 gccaggtctggagctttcaatcttacggcggcctgaaggggttaaattatcattattgat 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gccaggtctggagctttcaatcttacggcggcctgaaggggttaaattatcattattgat 413
Query: 525 cccggtcgattttattaacattggtttcaatgcagaaatgaaggaatgtaccaaatcatg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cccggtcgattttattaacattggtttcaatgcagaaatgaaggaatgtaccaaatcatg 353
Query: 585 atctcggtccaaataattatctataagatgtgttactctatctctttgctcgtaccttgt 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 atctcggtccaaataattatctataagatgtgttactctatctctttgctcgtaccttgt 293
Query: 645 ccagtgttcatttaacaaaaagtatgacaagctgaccaatcctttggtaaaccattcttt 704
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ccagtgttcatttaacaaaaagtatgacaagctgaccaatcctttggtaaaccattcttc 233
Query: 705 cttattctcaacgtntatatttcttatcatagaaaaatatcaattgntctactgaatctt 764
|||||||||||||| |||| |||||||||||||||| |||||||| |||||||||||||
Sbjct: 232 cttattctcaacgtttata-ttcttatcatagaaaataatcaattgttctactgaatctt 174
Query: 765 tgcttggaacactcaatttgtctttcttcaggttttaataaaaaattcaacacatgtttg 824
|||||||||||||||||||||| ||| ||| | ||||||||||||||||||||||| |||
Sbjct: 173 tgcttggaacactcaatttgtc-ttcctcaaggtttaataaaaaattcaacacatg-ttg 116
Query: 825 attcattgtataatcgattgccttcttacattgcccttagaaatgcttatattttgaggt 884
|||||||||||||||||||| |||| || |||| |||||||||||| |||||||||||||
Sbjct: 115 attcattgtataatcgattggcttc-tagattggccttagaaatgc-tatattttgaggt 58
Query: 885 ttttcgagcagggtttgttaacgaacat-aatatgctttgatattgggataagctctca 942
|||||| ||| || ||| |||||| ||| ||||||| |||| ||||||| ||||||||
Sbjct: 57 ttttcg-gcaaggcttggtaacgatcatcaatatgc-ttgaatttgggatgagctctca 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8123
Number of Sequences: 1807
Number of extensions: 8123
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)