BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZB09FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1621 1497 0.0
>3x_Contig1621
Length = 10398
Score = 1497 bits (755), Expect = 0.0
Identities = 816/832 (98%), Gaps = 4/832 (0%)
Strand = Plus / Minus
Query: 88 atggtgcacaagcggtggttatttctgtggaccctaaaagagtttatgttaacaatagga 147
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9987 atggagcacaagcggtggttatttctgtggaccctaaaagagtttatgttaacaatagga 9928
Query: 148 acgaaacccctaataaatgtttccaaactttatcgcctaatcctgaggggcaaaattggt 207
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 9927 acgaaacccctaataaatgtttccaaactctatcgcctaatcctgaggggcaaaattggt 9868
Query: 208 gctggtatcaatgtacaatcaagggtggtagagaatccagagacctaggagcctgggaat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9867 gctggtatcaatgtacaatcaagggtggtagagaatccagagacctaggagcctgggaat 9808
Query: 268 tggctcatgcatgtgaagcccttggtgctggtgagattctcctaaactgtattgataaag 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9807 tggctcatgcatgtgaagcccttggtgctggtgagattctcctaaactgtattgataaag 9748
Query: 328 acggctcaaactcaggatacgatttggaattaatcgatcatattaaaagtgccgtttcaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9747 acggctcaaactcaggatacgatttggaattaatcgatcatattaaaagtgccgtttcaa 9688
Query: 388 ttcctgttattgcctcatcaggtgcagggaatccaggtcactttgaacaaggatttacaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9687 ttcctgttattgcctcatcaggtgcagggaatccaggtcactttgaacaaggatttacaa 9628
Query: 448 agacaaaggctgatgcttgtttaggtgcaggtatgttccatagaggagaatacactgtta 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9627 agacaaaggctgatgcttgtttaggtgcaggtatgttccatagaggagaatacactgtta 9568
Query: 508 accaggtcaaggattacctgatctctaaaggtttaaaagtcagaattgataacgagtaac 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9567 accaggtcaaggattacctgatctctaaaggtttaaaagtcagaattgataacgagtaac 9508
Query: 568 cttatcgattaatatcgactcatttaggttgttacctagtgcgtaatctttttaattaat 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9507 cttatcgattaatatcgactcatttaggttgttacctagtgcgtaatctttttaattaat 9448
Query: 628 tttgtaaatatatagatacacaaatactgtctaatgaaagtacagataacttttattaat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9447 tttgtaaatatatagatacacaaatactgtctaatgaaagtacagataacttttattaat 9388
Query: 688 tttaatcatccatttcatcagctcttttttctgcttcttcgtcagat-atttaacaccac 746
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 9387 tttaatcatccatttcatcagctcttttttctgcttcttcgtcagataatttaacaccac 9328
Query: 747 cagaaatagaanactgaccaccgcagccaatgaagaacatgctgtgatcttgagtggccg 806
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 9327 cagaaatagaaaactgaccaccgcagccaatgaagacaatgctgtgatcttgagtggccg 9268
Query: 807 tgtttttgtatcttggttagtgtttcaatatcatcnccagaaggacct-aaccaactggc 865
|||||||| |||| || |||||||||||||||| |||||||||||| |||||||| ||
Sbjct: 9267 tgtttttgattctt-gtaggtgtttcaatatcatctccagaaggacctaaaccaact-gc 9210
Query: 866 ataagtttcaccgaatccccagnaatacactataccatttttggccatagcg 917
|||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 9209 ataagtttcaccgaatccccaggaatacactataccatttttggcaatagcg 9158
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5833
Number of Sequences: 1807
Number of extensions: 5833
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)