BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZB09RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1031 1574 0.0
>3x_Contig1031
Length = 5135
Score = 1574 bits (794), Expect = 0.0
Identities = 862/877 (98%), Gaps = 6/877 (0%)
Strand = Plus / Minus
Query: 47 gcttcttcctctgtgataatacgctctctggctttacttacgcttggaaaattttactga 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1325 gcttcttcctctgtgataatacgctctctggctttacttacgcttggaaaattttactga 1266
Query: 107 taaaagaaatctgttaaaggtagggtaatgaggaaaatagcatcccaagtagaagtactg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1265 taaaagaaatctgttaaaggtagggtaatgaggaaaatagcatcccaagtagaagtactg 1206
Query: 167 tgtcacttggtgatgataaactctcagagtgtgtccatacggatctcagaactatattcc 226
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 1205 tgtcacttggtgatgataaactctcagagtgtgtccatacggatctcagaacgagattcc 1146
Query: 227 atgacatattatgggtactggtttgaaacctttggtttttgctgcactagtataagtata 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 atgacatattatgggtactggtttgaaacctttggtttttgctgcactagtataagtata 1086
Query: 287 agtatatagatatatcaatgtatagttggcttcacatgaaaggatcgcattgtctaacaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 agtatatagatatatcaatgtatagttggcttcacatgaaaggatcgcattgtctaacaa 1026
Query: 347 acatgctcgacaggcgcattgtcgtcaacgaactctcctagttcactcttcaactttcta 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 acatgctcgacaggcgcattgtcgtcaacgaactctcctagttcactcttcaactttcta 966
Query: 407 tcaaataactcaaacataaaacccaaacatgcttttgtcactgcggaatcgaatctcccc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 tcaaataactcaaacataaaacccaaacatgcttttgtcactgcggaatcgaatctcccc 906
Query: 467 ttgctgaattcgtctctgataaatgcatgttgagcaccgttgatttctaaaaatgtgaca 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 ttgctgaattcgtctctgataaatgcatgttgagcaccgttgatttctaaaaatgtgaca 846
Query: 527 gacttatccttcactgcatttctaatttgatctctgccttcccatggcacatgagtatct 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 gacttatccttcactgcatttctaatttgatctctgccttcccatggcacatgagtatct 786
Query: 587 ttggtaccaaaaatcaagaaacattcctggtcctttttccaattggctgtaaccttttcc 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 ttggtaccaaaaatcaagaaacattcctggtcctttttccaattggctgtaaccttttcc 726
Query: 647 aatgaatcgtcattcttgcccaaacctaaagagtgagagtgaatatncagt-gggaagaa 705
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 725 aatgaatcgtcattcttgcccaaacctaaagagtgagagtgaatat-cagtggggaagaa 667
Query: 706 acatgttgtagccttgattctggagtcaagttgagctctgaaagccaaatgtccacctta 765
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 666 acatgttgtagccttgattctggagtcaagttgagctctgaaggccaaatgtccacctaa 607
Query: 766 gcacatgccagttgcaccaactcttccataccattgtggtangttttctagtacattaag 825
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct: 606 gcacatgccagttgcaccaactcttccattccattgtggtaggttttctagtacatcaag 547
Query: 826 gcacaacgtaacatcttcatcatacgaattct-agggtttttcaatcttgaaatttgtta 884
|||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct: 546 gcacaacgtaacatcttcatcatacg-attctaagggtttttcaatcttg-aatttgtta 489
Query: 885 cctagatcaatacccctcagtatcatacgcccagggt 921
||||||||| || |||||||||||||||||| |||||
Sbjct: 488 cctagatcagta-ccctcagtatcatacgccaagggt 453
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6727
Number of Sequences: 1807
Number of extensions: 6727
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)