BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZB10FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig720 1376 0.0
>3x_Contig720
Length = 2178
Score = 1376 bits (694), Expect = 0.0
Identities = 781/802 (97%), Gaps = 6/802 (0%)
Strand = Plus / Minus
Query: 88 attccattgtttcgaggatagcttgattttatcttcaaacagcattttcgattacttcaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1082 attccattgtttcgaggatagcttgattttatcttcaaacagcattttcgattacttcaa 1023
Query: 148 accgaaaaccattgtgccttttttcactgttctgacctaatatacgttatctgctctatc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 accgaaaaccattgtgccttttttcactgttctgacctaatatacgttatctgctctatc 963
Query: 208 ataaaaccggtggctaatattcgcaggattcataggaagcgggacagtgctaataataat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 ataaaaccggtggctaatattcgcaggattcataggaagcgggacagtgctaataataat 903
Query: 268 accattaagatatatcagctgttaccatgtcttcggttattcttcctccacaagctccag 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 accattaagatatatcagctgttaccatgtcttcggttattcttcctccacaagctccag 843
Query: 328 ttgagcgtttgaacagaactgctagtttcaggactttggaaagagaatcaagatttatta 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 ttgagcgtttgaacagaactgctagtttcaggactttggaaagagaatcaagatttatta 783
Query: 388 atcctccaaaggataaatctgcatacccattcctagcggacgctgtacagccacacattg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 atcctccaaaggataaatctgcatacccattcctagcggacgctgtacagccacacattg 723
Query: 448 gctccttcaatgcattgactgagggacctgatggtggtttgttaaacctaggggcaaaag 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 gctccttcaatgcattgactgagggacctgatggtggtttgttaaacctaggggcaaaag 663
Query: 508 atattggatccaaagttattttcgatggtaagggatcggacactaacccaaactacttgg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 atattggatccaaagttattttcgatggtaagggatcggacactaacccaaactacttgg 603
Query: 568 gtaacaaattatctttgagtattgaacaggtgtctatttctaaaccaacttctaacgatg 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gtaacaaattatctttgagtattgaacaggtgtctatttctaaaccaacttctaacgatg 543
Query: 628 gtgttttcttctgcagtagaacgcaaggttttcccatctgaatccagacagagattgact 687
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gtg-tttcttctgcagtagaacgcaaggttttcccatctgaatccagacagagattgact 484
Query: 688 tcatacagaggggaaatttttgctggagttgaaatggtcggtcaatgatggttgaagaaa 747
||||||||| |||||| |||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 483 tcatacaga-gggaaaattttgctgaagttgaaatggtcggtcaatgatgg-tgaagaaa 426
Query: 748 cttttacttgaataaagagactgtggtggtttgccaattatgctttaatccaataaatgt 807
||||||| |||| |||||||||||||||||||||||| |||||| | ||||||| ||||
Sbjct: 425 cttttac-tgaagtaagagactgtggtggtttgccaatcatgcttcagtccaatagatgt 367
Query: 808 catttgaacaagaagttttccataccaattattcgaacatagggaagaaactgatggaat 867
||||||||||||| | | ||||||| ||||| ||||||||||||||||| ||||| ||||
Sbjct: 366 catttgaacaagatg-tctccatacgaattagtcgaacatagggaagaatctgat-gaat 309
Query: 868 ttgggggttacctcattgttaa 889
|||| |||||| ||||||||||
Sbjct: 308 ttggtggttacttcattgttaa 287
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7029
Number of Sequences: 1807
Number of extensions: 7029
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)