BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZB10RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig370 844 0.0
3x_Contig1610 234 3e-61
>3x_Contig370
Length = 983
Score = 844 bits (426), Expect = 0.0
Identities = 439/442 (99%), Gaps = 1/442 (0%)
Strand = Plus / Plus
Query: 48 ttcattgaaatgatttcgattttaacattaagatttgtatgaagatgaggcttctaagag 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ttcattgaaatgatttcgattttaacattaagatttgtatgaagatgaggcttctaagag 601
Query: 108 acgcatacaagaacaggattatttgggacttttcagttgcgagtgcagagcgaagtgaag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 acgcatacaagaacaggattatttgggacttttcagttgcgagtgcagagcgaagtgaag 661
Query: 168 tagtaatctttgcgccagtgtttctgttcaatatctataacaaatgcctcgttttttccc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tagtaatctttgcgccagtgtttctgttcaatatctataacaaatgcctcgttttttccc 721
Query: 228 atctctcaaacagggtttgagaaaccttgctactgcggtagagacggaatctacagtagc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 atctctcaaacagggtttgagaaaccttgctactgcggtagagacggaatctacagtagc 781
Query: 288 agtcaaagccagtcagttcaagagacctcgtcaatccgtacaaagcagaatcttggagta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 agtcaaagccagtcagttcaagagacctcgtcaatccgtacaaagcagaatcttggagta 841
Query: 348 cactcgtgaagcgatt-aaaactgagaaaccacattttaaagttggtggtgcagagctct 406
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 842 cactcgtgaagcgattaaaaactgagaaaccacattttaaagtgggtggtgcagagctct 901
Query: 407 attttcctaaagcgagagttattctactaagaccaaatgctaaacacactccatatcaag 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 attttcctaaagcgagagttattctactaagaccaaatgctaaacacactccatatcaag 961
Query: 467 cgaaattcatcgttcctaaatc 488
|| |||||||||||||||||||
Sbjct: 962 cggaattcatcgttcctaaatc 983
>3x_Contig1610
Length = 13981
Score = 234 bits (118), Expect = 3e-61
Identities = 233/266 (87%), Gaps = 4/266 (1%)
Strand = Plus / Plus
Query: 559 cagttattgcatgcc-gatacactcgtgctacgcccgtgtctgccaggtacccgtgtcct 617
||||||||||||||| ||||||||||||||||||| ||||| ||||||||| |||||
Sbjct: 1 cagttattgcatgccagatacactcgtgctacgccggtgtcgcccaggtaccgtggtcct 60
Query: 618 caaatcaagaagatgactatcgatatggcagaaccatttatttggcctgcagaacctgaa 677
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 61 caaatcaagaagatgactatcgatatggcagaaccatttatctggcctgcagaacctgag 120
Query: 678 gacaagaatgcatgaaattctgatttccaaaaggatttggaaaaattccgaaacgattgg 737
||||||| |||||| ||| |||| ||||||||||| ||||||||| | ||||||| | |
Sbjct: 121 gacaagagtgcatggaatactgagttccaaaaggaattggaaaaagacagaaacga-tag 179
Query: 738 gttgagactaggattcgacatttaccacaccttcaaaagctatttaatggtgttttggga 797
| |||||||||||| |||| || || ||||||||| || ||| ||||||| ||||||
Sbjct: 180 gatgagactaggatccgac-gctaacaaaccttcaaaggc-attcgatggtgtattggga 237
Query: 798 ccattccaggaaaatgcaaaaccttt 823
|||| |||||||| ||||||||||||
Sbjct: 238 ccataccaggaaactgcaaaaccttt 263
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6698
Number of Sequences: 1807
Number of extensions: 6698
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 2
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)