BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZB12FM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig331 1548 0.0
>3x_Contig331
Length = 1863
Score = 1548 bits (781), Expect = 0.0
Identities = 798/801 (99%), Gaps = 2/801 (0%)
Strand = Plus / Minus
Query: 86 tctgcaccatattgaaatccacactattgatagatcttgtatgttctgagagagatgtta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tctgcaccatattgaaatccacactattgatagatcttgtatgttctgagagagatgtta 742
Query: 146 caactggattgtctatcgctgatgtcttattaatatcgtaaatcgcaacagacgttgaag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caactggattgtctatcgctgatgtcttattaatatcgtaaatcgcaacagacgttgaag 682
Query: 206 taccacaaattgctacatagtttttgtgattgtaaaagccagctttaacatcagatatgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taccacaaattgctacatagtttttgtgattgtaaaagccagctttaacatcagatatgg 622
Query: 266 ttgaaattttttttgttgttctccgtagtgtcgatgaagtgttcttcgtgatcccagtat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgaaattttttttgttgttctccgtagtgtcgatgaagtgttcttcgtgatcccagtat 562
Query: 326 ttgtcttcgctgtctgtaagaaatcatgtacattagttatcgtcttagaatcttcatcga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtcttcgctgtctgtaagaaatcatgtacattagttatcgtcttagaatcttcatcga 502
Query: 386 aagtgtaaatacctaaatggctttttcctgctattatcaaggatctgctctccggtgaat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtgtaaatacctaaatggctttttcctgctattatcaaggatctgctctccggtgaat 442
Query: 446 tgattttatctatacttgagacttcctttccgatactcagagagtatttagcgccgtgga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgattttatctatacttgagacttcctttccgatactcagagagtatttagcgccgtgga 382
Query: 506 aagttctacgtttgtcaaatgaactttcagaaggtctccatcttgcatttgattcttctt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagttctacgtttgtcaaatgaactttcagaaggtctccatcttgcatttgattcttctt 322
Query: 566 cattaagagagctctctggtccaacatttcccgtaccatcaaaactgaagggagtgcggc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattaagagagctctctggtccaacatttcccgtaccatcaaaactgaagggagtgcggc 262
Query: 626 tatctggtttatacttaggtgatatcctaaaaggtgaagttccaaaacctgtgttgtact 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatctggtttatacttaggtgatatcctaaaaggtgaagttccaaaacctgtgttgtact 202
Query: 686 gtcgatgaaaagagtatcgtgaacttgacgactgatatttcagagagggaggattttctg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtcgatgaaaagagtatcgtgaacttgacgactgatatttcagagagggaggattttctg 142
Query: 746 gttgctgcccttgagaagacgaa-tagctctgtttgaacctctttt-aacatcgttgagc 803
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 141 gttgctgcccttgagaagacgaagtagctctgtttgaacctcttttaaacatcgttgagc 82
Query: 804 aacaatactcagtgctctcgatcaccggtttattttgcttacaaccaattgctggatttt 863
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 81 aacaatactcagtgctctcgatcaccggtttatttggcttacaaccaattgctggatttt 22
Query: 864 tgaatcatagtatgtgagtgc 884
|||||||||||||||||||||
Sbjct: 21 tgaatcatagtatgtgagtgc 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6692
Number of Sequences: 1807
Number of extensions: 6692
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)