BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZC01FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1663 1364 0.0
3x_Contig555 394 e-109
>3x_Contig1663
Length = 13533
Score = 1364 bits (688), Expect = 0.0
Identities = 722/728 (99%), Gaps = 4/728 (0%)
Strand = Plus / Plus
Query: 89 tgaacgaactcacacgtgactgggaagatatcaaatctcagttaccctgatattacccta 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11869 tgaacgaactcacacgtgactgggaagatatcaaatctcagttaccctgatattacccta 11928
Query: 149 tttcttttctaccctaaataggattgtgaccctgcagaagagcagacaacagtaaaataa 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11929 tttcttttctaccctaaataggattgtgaccctgcagaagagcagacaacagtaaaataa 11988
Query: 209 tacattggatacgtaatcaaaccgattcgatatgaagtgctatcaccatgtgtttctcaa 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11989 tacattggatacgtaatcaaaccgattcgatatgaagtgctatcaccatgtgtttctcaa 12048
Query: 269 gtactggttatagggaggccagttgcaacagaagtattctatgctgactgattcttcact 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12049 gtactggttatagggaggccagttgcaacagaagtattctatgctgactgattcttcact 12108
Query: 329 ttctgtttcttatatttctcttttagtaaattgatggaaaatgcaagaaatcgaaaaaaa 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12109 ttctgtttcttatatttctcttttagtaaattgatggaaaatgcaagaaatcgaaaaaaa 12168
Query: 389 aaaaaaattaaaacaatgaaattgaatacttgattcagtttagttatgtatcatcatctc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12169 aaaaaaattaaaacaatgaaattgaatacttgattcagtttagttatgtatcatcatctc 12228
Query: 449 ttgcgcttacgatttgagacactttcgaatagatactgctatttattatactccgttgtt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12229 ttgcgcttacgatttgagacactttcgaatagatactgctatttattatactccgttgtt 12288
Query: 509 gcaactttactgtagtcactgcacacacataccctgatacagttataaaataaaaatgtc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12289 gcaactttactgtagtcactgcacacacataccctgatacagttataaaataaaaatgtc 12348
Query: 569 tgctgaagttcctactttcaagctagttctagtcggtgatggtggtaccggtaagacaac 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12349 tgctgaagttcctactttcaagctagttctagtcggtgatggtggtaccggtaagacaac 12408
Query: 629 tttcgtcaagagacatttgactggtgaattcgagaag-agtacattgctaccatcggggt 687
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 12409 tttcgtcaagagacatttgactggtgaattcgagaagaagtacattgctaccatcggtgt 12468
Query: 688 tgaagtgcatcctttggctttttacaccaactttggtgaaatcaaattcgatgtctggga 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12469 tgaagtgcatcctttggctttttacaccaactttggtgaaatcaaattcgatgtctggga 12528
Query: 748 taccgcaggtcaagaaaaattcggtgggtctaagagaatggttattatatcaatggctca 807
||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||
Sbjct: 12529 taccgcaggtcaagaaaaattcggt-ggtctaagag-atggttattatatcaat-gctca 12585
Query: 808 atggggta 815
||| ||||
Sbjct: 12586 atgtggta 12593
>3x_Contig555
Length = 1912
Score = 394 bits (199), Expect = e-109
Identities = 233/239 (97%), Gaps = 4/239 (1%)
Strand = Plus / Minus
Query: 578 tcctactttcaagctagttctagtcggtgatggtggtaccggtaagacaactttcgtcaa 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1908 tcctactttcaagctagttctagtcggtgatggtggtaccggtaagacaactttcgtcaa 1849
Query: 638 gagacatttgactggtgaattcgagaaga-gtacattgctaccatcggggttgaagtgca 696
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 1848 gagacatttgactggtgaattcgagaagaagtacattgctaccatcggtgttgaagtgca 1789
Query: 697 tcctttggctttttacaccaactttggtgaaatcaaattcgatgtctgggataccgcagg 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1788 tcctttggctttttacaccaactttggtgaaatcaaattcgatgtctgggataccgcagg 1729
Query: 757 tcaagaaaaattcggtgggtctaagagaatggttattatatcaatggctcaatggggta 815
|||||||||||||||| |||||||||| ||||||||||||||||| |||||||| ||||
Sbjct: 1728 tcaagaaaaattcggt-ggtctaagag-atggttattatatcaat-gctcaatgtggta 1673
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,901
Number of Sequences: 1807
Number of extensions: 15901
Number of successful extensions: 443
Number of sequences better than 1.0e-20: 2
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)