BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZC01RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1432 1185 0.0
>3x_Contig1432
Length = 8634
Score = 1185 bits (598), Expect = 0.0
Identities = 651/665 (97%), Gaps = 3/665 (0%)
Strand = Plus / Minus
Query: 48 taccaatcttgaaacgggctaaggatatgggacttccaatcaccgccgaaacttgcttcc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1817 taccaatcttgaaacgggctaaggatatgggacttccaatcaccgccgaaacttgcttcc 1758
Query: 108 attatctttcattggcagctgaaagggttcctaaatccaagactttttacaaatgttgtc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1757 attatctttcattggcagctgaaagggttcctaaatccaagactttttacaaatgttgtc 1698
Query: 168 caccgatacgtagtgagaagaacagaaaggaactttggagagccttaagagaaggtctaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1697 caccgatacgtagtgagaagaacagaaaggaactttggagagccttaagagaaggtctaa 1638
Query: 228 tcacttctgtagtaagtgaccattctccatgtataccggagctaaaagacctcgcaaaag 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1637 tcacttctgtagtaagtgaccattctccatgtataccggagctaaaagacctcgcaaaag 1578
Query: 288 gtgatttttttagtgcatggggaggaattgcatccgtcgggttgggactaccattactat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1577 gtgatttttttagtgcatggggaggaattgcatccgtcgggttgggactaccattactat 1518
Query: 348 acactaacggtgcttccatcgctgaaatcattcaatggtgttgcgagaacaccagtaagc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1517 acactaacggtgcttccatcgctgaaatcattcaatggtgttgcgagaacaccagtaagc 1458
Query: 408 aagttggtcttgatcacaggaagggtttcctaagaactggatacgacgcagattttgtta 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1457 aagttggtcttgatcacaggaagggtttcctaagaactggatacgacgcagattttgtta 1398
Query: 468 tcttcgacatcaatacctatcagactgtcgacaacgattaagtttatttcaaaaacaaac 527
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1397 tcttcgacatcaatacctatcagactgtcgacaacgataaagtttatttcaaaaacaaac 1338
Query: 528 tgacagcctatgatgggttcaaactgaaaggtttagtgagaaacacctatgttagaagaa 587
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1337 tgacagcctatgatgggttcaaactgaaaggtttagtgagaaacacctatgttagaggaa 1278
Query: 588 aattggcttttgaacttgacngcatgggacattattaaaaaccctcccggccagacaatt 647
|||||||||||||||||||| |||||||||| || ||||||||||||||||||||||| |
Sbjct: 1277 aattggcttttgaacttgacggcatgggaca-taataaaaaccctcccggccagacaa-t 1220
Query: 648 tctttgacgccaaaaaacatgaaatcccccatcttctaatcattttttttttcttcaatt 707
|||| |||| || |||||||| | |||||||||||||||| |||||||||||||||||
Sbjct: 1219 tcttgaacgcagaagaacatgaagtaccccatcttctaatca-tttttttttcttcaatt 1161
Query: 708 ttgaa 712
|||||
Sbjct: 1160 ttgaa 1156
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,037
Number of Sequences: 1807
Number of extensions: 22037
Number of successful extensions: 212
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)