BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZC02FM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1774 1505 0.0
>3x_Contig1774
Length = 27771
Score = 1505 bits (759), Expect = 0.0
Identities = 824/841 (97%), Gaps = 4/841 (0%)
Strand = Plus / Minus
Query: 86 gatccctcaagggacagtggaccaaagaggtccgagatctcgataacggccaacaaattt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3736 gatccctcaagggacagtggaccaaagaggtccgagatctcgataacggccaacaaattt 3677
Query: 146 ggaaatgcggaccgttagtggaaaacagtgaaaagaaatacggattcaccgtttttacct 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3676 ggaaatgcggaccgttagtggaaaacagtgaaaagaaatacggattcaccgtttttacct 3617
Query: 206 ccaacttgaactattatcacagagacagaaaaggatcatttaccaccaactgattcccgg 265
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3616 ccaacttgaacgag-atcacagagacagaaaaggatcatttaccaccaactgattcccgg 3558
Query: 266 ttgagacccgatattcgcctgtatgaaaacggtatcattacagaggctgaacaaatgaag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3557 ttgagacccgatattcgcctgtatgaaaacggtatcattacagaggctgaacaaatgaag 3498
Query: 326 ctgtcactggaacaaaagcaacgtgaaagaagagataagggcgaagacgcacaacctcaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3497 ctgtcactggaacaaaagcaacgtgaaagaagagataagggcgaagacgcacaacctcaa 3438
Query: 386 tacttcaaacagattaaacccatgaaatggctccccgttactggtgaaaataactactgg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3437 tacttcaaacagattaaacccatgaaatggctccccgttactggtgaaaataactactgg 3378
Query: 446 gaaagaagaaaaaggcacgattggagcaacaccaaatctttatggtgaaagaaaaaggta 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3377 gaaagaagaaaaaggcacgattggagcaacaccaaatctttatggtgaaagaaaa-ggta 3319
Query: 506 aaaaagcacgttgccattacattcggccgttactatctcggccactcatcactccgcata 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3318 aaaaagcacgttgccattacattcggccgttactatctcggccactcatcactccgcata 3259
Query: 566 gtgtcaaaatatgtataataaagtgtcagatttaaataacccatagaaaagaaactaact 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3258 gtgtcaaaatatgtataataaagtgtcagatttaaataacccatagaaaagaaactaact 3199
Query: 626 caagagatcaatacacaatccagcctaatgcatgccgaaccagaattntttattaattgc 685
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 3198 caagagatcaatacacaatccagcctaatgcatgccgaaccagaattttttattaattgc 3139
Query: 686 ataaattcttcgaaagaaattcaagcgcgtgctatcagccgattcgaaatcccaagatct 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3138 ataaattcttcgaaagaaattcaagcgcgtgctatcagccgattcgaaatcccaagatct 3079
Query: 746 cgatctattttccagcccgtgggtcggacgtaacaactcctctttttcaaccttattcag 805
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3078 cgatctaatttccagcccgtgggtcggacgtaacaactcctctttttcaaccttattcag 3019
Query: 806 tggcctagggtagatacanagacatattcacttaattacttcacatgccaaggcttcctc 865
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 3018 tggcctagggtagatacaaagacatattcactaaattacttcacatgccaaggctt-ctc 2960
Query: 866 tgtgacagtttccatgcttttttggcattctctttgttttcaataaatgtttatatgaac 925
|||||||||||||||||||||||| | |||| || |||||||| |||| |||||||||
Sbjct: 2959 tgtgacagtttccatgcttttttgcagtcctctctg-tttcaatagatgtatatatgaac 2901
Query: 926 a 926
|
Sbjct: 2900 a 2900
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6724
Number of Sequences: 1807
Number of extensions: 6724
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)