BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZC02RM1.SCF screened BAC_end
(983 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1297 1239 0.0
>3x_Contig1297
Length = 4767
Score = 1239 bits (625), Expect = 0.0
Identities = 712/729 (97%), Gaps = 9/729 (1%)
Strand = Plus / Minus
Query: 45 gcttactttaagatacagctggtattatagccctcataataccagcccataatgaccata 104
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3877 gcttactttaagatacagctggtatta-agccctcataataccagcccataatgaccata 3819
Query: 105 ttcccttgataacagtacctaatgccttgatattgcatgtattcccatcatacaagatag 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3818 ttcccttgataacagtacctaatgccttgatattgcatgtattcccatcatacaagatag 3759
Query: 165 cacttagacacagcgatgacctcgtttggagtgatctgaaaaattttgaaaaatttttta 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3758 cacttagacacagcgatgacctcgtttggagtgatctgaaaaattttgaaaaatttcaaa 3699
Query: 225 atttggatcgctgcctcgagtcgaaaaactacaaagaaacagtttgaatcgtagttaaaa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3698 atttggatcgctgcctcgagtcgaaaaactacaaagaaacagtttgaatcgtagttaaaa 3639
Query: 285 ggactaaactgttagaattaagattcaataattctaatatttgtgtcctgtgtaattaca 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3638 ggactaaactgttagaattaagattcaataattctaatatttgtgtcctgtgtaattaca 3579
Query: 345 atctgttgatattcggtcgaggaagattgaattgtgaaaataccagacagaaaccattca 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3578 atctgttgatattcggtcgaggaagattgaattgtgaaaataccagacagaaaccattca 3519
Query: 405 gacagtatttttttacttctggaataatgtccttaaccaaaattggtcttaacttaagca 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3518 gacagtatttttttacttctggaataatgtccttaaccaaaattggtcttaacttaagca 3459
Query: 465 caaaattcggcgtgcgtaatggttcttatctacacgttgggactagggtacgtggtttga 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3458 caaaattcggcgtgcgtaatggttcttatctacacgttgggactagggtacgtggtttga 3399
Query: 525 aaagagacccagttgagtctttgaagaatccacacggtttgcactatgattctcttgtca 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3398 aaagagacccagttgagtctttgaagaatccacacggtttgcactatgattctcttgtca 3339
Query: 585 aggatggccatgtatctactgttaagcaaggtttgaatttggaaaaatatggtattgact 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3338 aggatggccatgtatctactgttaagcaaggtttgaatttggaaaaatatggtattgact 3279
Query: 645 tgccagacgacatcattacacaatgttttgactcacaagttcgtttgccccaaggtattt 704
||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| ||
Sbjct: 3278 tgccagacgacatcattacacaatg-tttgactcacaag-tcgtttg-cccaaggta-tt 3223
Query: 705 aacccttacaattcagaatttgtctattatctgttgggcatttttgtgaaatatcaaggc 764
|| || ||||| |||||| |||||||||||| | ||| || |||||||||||||||| ||
Sbjct: 3222 aaaccatacaa-tcagaaattgtctattatc-ggtggtca-ttttgtgaaatatcaa-gc 3167
Query: 765 ttgtcttca 773
|||||||||
Sbjct: 3166 ttgtcttca 3158
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8594
Number of Sequences: 1807
Number of extensions: 8594
Number of successful extensions: 84
Number of sequences better than 1.0e-20: 1
length of query: 983
length of database: 10,358,551
effective HSP length: 16
effective length of query: 967
effective length of database: 10,329,639
effective search space: 9988760913
effective search space used: 9988760913
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)