BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZC03FM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig459 1011 0.0
3x_Contig468 262 1e-69
>3x_Contig459
Length = 1510
Score = 1011 bits (510), Expect = 0.0
Identities = 547/554 (98%), Gaps = 4/554 (0%)
Strand = Plus / Plus
Query: 354 tcttctttatcatctaaagccagtttatttgcaggagttggagttcgttctcttcgaaat 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcttctttatcatctaaagccagtttatttgcaggagttggagttcgttctcttcgaaat 60
Query: 414 atattccaacctctatgttcattcattgaagacgaacttttagatctgctaaaccccaaa 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atattccaacctctatgttcattcattgaagacgaacttttagatctgctaaaccccaaa 120
Query: 474 atgttgctgaacccgtgaataccatgagaaacgggcttatcagctgtctggttctcataa 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgttgctgaacccgtgaataccatgagaaacgggcttatcagctgtctggttctcataa 180
Query: 534 tcattatcggaagacgaagtagaattatcttcctttatggagtattcagatagttcaggt 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcattatcggaagacgaagtagaattatcttcctttatggagtattcagatagttcaggt 240
Query: 594 ggtctattcatacggacagtgtgtgaaccttccatcatgatgaatgaatgcctgag-gac 652
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 241 ggtctattcatacggacagtgtgtgaaccttccatcatgatgaatgaatgcctgagcgac 300
Query: 653 tactggttcaaaagcagaaccgtagacaaagaccaaattagcaacaagagtctttggtgg 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tactggttcaaaagcagaaccgtagacaaagaccaaattagcaacaagagtctttggtgg 360
Query: 713 caaccagaacacacgtcagattgtttcattatatatccaatccgttagttttttcctcca 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caaccagaacacacgtcagattgtttcattatatatccaatccgttagttttttcctcca 420
Query: 773 tcgagatatctaataaattgttttttgtaaactgacgctgtcatctgacacaataagtta 832
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcgagatatctaataaattgttttttgtaaactgacgctgtcatctgacacaataagtt- 479
Query: 833 ataaggtgagaaattggaaatttcaattatagcgcagcaaattttaacgttaacttttag 892
||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||
Sbjct: 480 ataaggtgagaaattgg-aatttcaattatagcgcagcaaattttaacgtt-acgtttag 537
Query: 893 ggaatcttcctgtt 906
|||| || ||||||
Sbjct: 538 ggaacctccctgtt 551
>3x_Contig468
Length = 2584
Score = 262 bits (132), Expect = 1e-69
Identities = 171/180 (95%), Gaps = 3/180 (1%)
Strand = Plus / Minus
Query: 88 cacgcaaagaatccatgtcagtagtatccgagtcactcgtttcaataggatcat-ctttt 146
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 178 cacgcaaagaatccatgtcagtagtatccgagtcactcgtttcaataggatcatgctttt 119
Query: 147 ttggtggggctggcactattatcaacaacattttcaaaggaatcttgtaacatcgcttct 206
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 118 ttggtggggctggcactattatcaacaaca-tttcaaaggaatcttgtaacatcgcttct 60
Query: 207 aacctatcattattttaaagaagaagtttttcctccggcgaaatagcttcgtcaaaaaga 266
|||||||||||| | |||||||||||| | ||||||||||||||| ||||||||||||
Sbjct: 59 aacctatcattagctgaaagaagaagttatatctccggcgaaatagc-tcgtcaaaaaga 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6694
Number of Sequences: 1807
Number of extensions: 6694
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 2
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)