BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZC03RM1.SCF screened BAC_end
(877 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1065 801 0.0
>3x_Contig1065
Length = 3891
Score = 801 bits (404), Expect = 0.0
Identities = 430/436 (98%), Gaps = 2/436 (0%)
Strand = Plus / Minus
Query: 45 gcttgaaaactttgggtcatttatttatttacaatcattatgattactttttggatgtta 104
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3288 gcttgaaaactttgggtcatttaaatatttacaatcattatgattactttttggatgtta 3229
Query: 105 attatgtggtaatagtctatttacgatttaagcttttgaattttagctaacatacctgat 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3228 attatgtggtaatagtctatttacgatttaagcttttgaattttagctaacatacctgat 3169
Query: 165 agttgaagatgagtcccgacaccttcaagaattctcatatgtgtaaagccgatttccttg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3168 agttgaagatgagtcccgacaccttcaagaattctcatatgtgtaaagccgatttccttg 3109
Query: 225 atcatctccaatctaaccgtttccttaacttcatcgagatttttcattactctgaaacaa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3108 atcatctccaatctaaccgtttccttaacttcatcgagatttttcattactctgaaacaa 3049
Query: 285 gttatcactatatctaccgcagagtagcctttaacccaaagttcttttaaatattgcagc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3048 gttatcactatatctaccgcagagtagcctttaacccaaagttcttttaaatattgcagc 2989
Query: 345 gattcatcgagagatccagataatagcattctcttgactattagtggatgcggggaatca 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2988 gattcatcgagagatccagataatagcattctcttgactattagtggatgcggggaatca 2929
Query: 405 acaatttggaaaacgttcttcccatttactaaaccgaaaccagcaactgtacttttgtaa 464
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct: 2928 acaatttggaaaacgttctccccatttactaaaccgaaaccagcaactgtac-tttgt-a 2871
Query: 465 aattggttattgcctg 480
||||| ||||||||||
Sbjct: 2870 aattgtttattgcctg 2855
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8676
Number of Sequences: 1807
Number of extensions: 8676
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 877
length of database: 10,358,551
effective HSP length: 16
effective length of query: 861
effective length of database: 10,329,639
effective search space: 8893819179
effective search space used: 8893819179
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)