BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZC04FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1516 1233 0.0
>3x_Contig1516
Length = 8750
Score = 1233 bits (622), Expect = 0.0
Identities = 672/681 (98%), Gaps = 7/681 (1%)
Strand = Plus / Minus
Query: 87 cgtggacagagaaaacagtttctggagtggtgtaaagtttgtcgttagaagtaccttcgt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5074 cgtggacagagaaaacagtttctggagtggtgtaaagtttgtcgttagaagtaccttcgt 5015
Query: 147 tgttgacaccatcttcttcaccaccggtgataccgatttccatttccaaccattggtgga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5014 tgttgacaccatcttcttcaccaccggtgataccgatttccatttccaaccattggtgga 4955
Query: 207 tcttggccattctggtgaagtatttgacacatagaccaatgttttcctcatcagtttctt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4954 tcttggccattctggtgaagtatttgacacatagaccaatgttttcctcatcagtttctt 4895
Query: 267 cggacaaatccaacatgtgggaggagaacaatggttcaccgtgcttagcgaagtattctt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4894 cggacaaatccaacatgtgggaggagaacaatggttcaccgtgcttagcgaagtattctt 4835
Query: 327 cgtcagcctttagcataccatcgaaccatggtagcaacttcttagcacaatgatcggtgt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4834 cgtcagcctttagcataccatcgaaccatggtagcaacttcttagcacaatgatcggtgt 4775
Query: 387 gtagaacaactgggataccgtaagctggagcaatggatctgatgtagtgagcagcagcga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4774 gtagaacaactgggataccgtaagctggagcaatggatctgatgtagtgagcagcagcga 4715
Query: 447 tagaacctctgatagaagcattttggccttcgttggaaacacccttaccagcaaagtaag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4714 tagaacctctgatagaagcattttggccttcgttggaaacacccttaccagcaaagtaag 4655
Query: 507 cagcaccaccgttggaagtttgcaaaatgattggagatttgttgtctctagcagcttcca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4654 cagcaccaccgttggaagtttgcaaaatgattggagatttgttgtctctagcagcttcca 4595
Query: 567 aagcagcaacaacagtggaagaagaggtcacgttgatagctggaatggcaaacttgtgtt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4594 aagcagcaacaacagtggaagaagaggtcacgttgatagctggaatggcaaacttgtgtt 4535
Query: 627 ccttagcgtagtcgaacaaagccttgacatcgtcaccgacaatgacaccgngtctttctg 686
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4534 ccttagcgtagtcgaacaaagccttgacatcgtcaccgacaatgacaccg-gtctttctg 4476
Query: 687 gtcaatacgtctttgagctggcattgtaatttttttttacgtgtttgtgggtttttttgg 746
||||||||||| ||||||||||||||||| ||| ||||||||| ||||||||||||| |
Sbjct: 4475 gtcaatacgtc-ttgagctggcattgtaa-tttcttttacgtg-ttgtgggtttttt--g 4421
Query: 747 ttttaattccgtattaagttt 767
||||||| ||||||||||||
Sbjct: 4420 gtttaatt-cgtattaagttt 4401
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7816
Number of Sequences: 1807
Number of extensions: 7816
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)