BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC26ZC04RM1.SCF screened BAC_end
         (936 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1594                                                         539   e-153
3x_Contig1613                                                         139   1e-32

>3x_Contig1594 
          Length = 9813

 Score =  539 bits (272), Expect = e-153
 Identities = 349/372 (93%), Gaps = 2/372 (0%)
 Strand = Plus / Minus

                                                                        
Query: 363  agattaaggtcgattcgaagtaagatattaacgcgtagtcatgggccataaacaaatctt 422
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9813 agattaaggtcgattcgaagtaagatattaacgcgtagtcatgggccataaacaaatctt 9754

                                                                        
Query: 423  gtcatgtcggaggtatatctcgtgtacagttcgagaagaaagaggtgaagaaaggagtaa 482
            |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 9753 gtcatgtcggaggtatatctcgtgtacagttccaaaagaaagaggtgaagaaaggagtaa 9694

                                                                        
Query: 483  atgaaagtcctgctgaaccgaaatactagcaacactagcggtatcagtggaaatcgaaat 542
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9693 atgaaagtcctgttgaaccgaaatactagcaacactagcggtatcagtggaaatcgaaat 9634

                                                                        
Query: 543  gaaaaattaatgatctatcagaaatcttggagaaagaaa-aaagaaaagttaaagccatc 601
            |||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||| |
Sbjct: 9633 gaaaaattaatgatctatcagaaatcatggagaaagaaagaaagaaaagtaaaagccaac 9574

                                                                        
Query: 602  ctaccgccagcttttttatttaagccttcttctttttatatcatctggttgtaactcagt 661
            | ||||||||||| | |||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 9573 caaccgccagcttctctattcaagccttcttcttttcatatcatctggttgtaactcagt 9514

                                                                        
Query: 662  gtttggagaaaccatcgaacatccgtccgaattatacttttttttttttcgttatggtac 721
            ||| |||||| |||||||  |||||| ||| |||||| ||| |||| |||||| ||||||
Sbjct: 9513 gttaggagaagccatcgacgatccgttcgacttatac-tttcttttcttcgttttggtac 9455

                        
Query: 722  ctgttccgttta 733
            |||| |||||||
Sbjct: 9454 ctgtaccgttta 9443


>3x_Contig1613 
          Length = 13977

 Score =  139 bits (70), Expect = 1e-32
 Identities = 77/78 (98%), Gaps = 1/78 (1%)
 Strand = Plus / Plus

                                                                         
Query: 49    tccttaataggatacccttttcagtcacacatcgtcttcgttgtaccataatatgaatac 108
             ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 13897 tccttaataggatacccttttcagtcacacatc-tcttcgttgtaccataatatgaatac 13955

                               
Query: 109   cgccattatttggataat 126
             ||||||||||||||||||
Sbjct: 13956 cgccattatttggataat 13973


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,875
Number of Sequences: 1807
Number of extensions: 15875
Number of successful extensions: 122
Number of sequences better than 1.0e-20: 2
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)