BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC26ZC04RM1.SCF screened BAC_end (936 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1594 539 e-153 3x_Contig1613 139 1e-32 >3x_Contig1594 Length = 9813 Score = 539 bits (272), Expect = e-153 Identities = 349/372 (93%), Gaps = 2/372 (0%) Strand = Plus / Minus Query: 363 agattaaggtcgattcgaagtaagatattaacgcgtagtcatgggccataaacaaatctt 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9813 agattaaggtcgattcgaagtaagatattaacgcgtagtcatgggccataaacaaatctt 9754 Query: 423 gtcatgtcggaggtatatctcgtgtacagttcgagaagaaagaggtgaagaaaggagtaa 482 |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct: 9753 gtcatgtcggaggtatatctcgtgtacagttccaaaagaaagaggtgaagaaaggagtaa 9694 Query: 483 atgaaagtcctgctgaaccgaaatactagcaacactagcggtatcagtggaaatcgaaat 542 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9693 atgaaagtcctgttgaaccgaaatactagcaacactagcggtatcagtggaaatcgaaat 9634 Query: 543 gaaaaattaatgatctatcagaaatcttggagaaagaaa-aaagaaaagttaaagccatc 601 |||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||| | Sbjct: 9633 gaaaaattaatgatctatcagaaatcatggagaaagaaagaaagaaaagtaaaagccaac 9574 Query: 602 ctaccgccagcttttttatttaagccttcttctttttatatcatctggttgtaactcagt 661 | ||||||||||| | |||| ||||||||||||||| ||||||||||||||||||||||| Sbjct: 9573 caaccgccagcttctctattcaagccttcttcttttcatatcatctggttgtaactcagt 9514 Query: 662 gtttggagaaaccatcgaacatccgtccgaattatacttttttttttttcgttatggtac 721 ||| |||||| ||||||| |||||| ||| |||||| ||| |||| |||||| |||||| Sbjct: 9513 gttaggagaagccatcgacgatccgttcgacttatac-tttcttttcttcgttttggtac 9455 Query: 722 ctgttccgttta 733 |||| ||||||| Sbjct: 9454 ctgtaccgttta 9443 >3x_Contig1613 Length = 13977 Score = 139 bits (70), Expect = 1e-32 Identities = 77/78 (98%), Gaps = 1/78 (1%) Strand = Plus / Plus Query: 49 tccttaataggatacccttttcagtcacacatcgtcttcgttgtaccataatatgaatac 108 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 13897 tccttaataggatacccttttcagtcacacatc-tcttcgttgtaccataatatgaatac 13955 Query: 109 cgccattatttggataat 126 |||||||||||||||||| Sbjct: 13956 cgccattatttggataat 13973 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,875 Number of Sequences: 1807 Number of extensions: 15875 Number of successful extensions: 122 Number of sequences better than 1.0e-20: 2 length of query: 936 length of database: 10,358,551 effective HSP length: 16 effective length of query: 920 effective length of database: 10,329,639 effective search space: 9503267880 effective search space used: 9503267880 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)