BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZC05FM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1758 1411 0.0
>3x_Contig1758
Length = 25930
Score = 1411 bits (712), Expect = 0.0
Identities = 819/841 (97%), Gaps = 11/841 (1%)
Strand = Plus / Plus
Query: 88 cgagtcgataaacgatgcaggtttgaaaaatagctccattctacttgaaaagatctcgga 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11974 cgagtcgataaacgatgcaggtttgaaaaatagctccattctacttgaaaagatctcgga 12033
Query: 148 ctgatttgcgtttcattgtttttacattaatatctaaccattcgtccagtatatctttag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12034 ctgatttgcgtttcattgtttttacattaatatctaaccattcgtccagtatatctttag 12093
Query: 208 actcaaacaaaaatatacttatatacttatataactgtaaaaatataattcgaagaatta 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12094 actcaaacaaaaatatacttatatacttatataactgtaaaaatataattcgaagaatta 12153
Query: 268 tgtctcacaaagcattacctgaaggtgttttctgcctcctgtctctatatgtgtcagtat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12154 tgtctcacaaagcattacctgaaggtgttttctgcctcctgtctctatatgtgtcagtat 12213
Query: 328 gcctcgtcaacttttttggtgctttttgttaaagtttacaaaattaagaatacacatcat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12214 gcctcgtcaacttttttggtgctttttgttaaagtttacaaaattaagaatacacatcat 12273
Query: 388 gatttatatagtaagcagttcgggttcatgaacaggactaaaatgtttctcgaatgatat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12274 gatttatatagtaagcagttcgggttcatgaacaggactaaaatgtttctcgaatgatat 12333
Query: 448 taagctttgtatcgtctggatagcggaaaccgagcatcagcatacttgtcgtatttagga 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12334 taagctttgtatcgtctggatagcggaaaccgagcatcagcatacttgtcgtatttagga 12393
Query: 508 tgaagctgtggggttatcaggcgttgtttttccttttatgtttggcatctaacgtcattg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12394 tgaagctgtggggttatcaggcgttgtttttccttttatgtttggcatctaacgtcattg 12453
Query: 568 gagaagctatcggtacagctacacataccaacaattgggccgtgttagtctctacctcaa 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12454 gagaagctatcggtacagctacacataccaacaattgggccgtgttagtctctacctcaa 12513
Query: 628 gattttggttcaactatagacacatggccaatgtcttgagtatgtatcgtacggtgaaag 687
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 12514 gattttggttcaactatagacacatggccaatgtcttgagtatgtatcgtacggtg-aag 12572
Query: 688 agtttaggtattcctgattcccaaatcattttaatgttaaagtgatgatgttgcttgcaa 747
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 12573 aggttaggtattcctgattcccaaatcattttaatgtt-aagtgatgatgttgcttgcaa 12631
Query: 748 cccaagaaacctttttncccggttctgttgttcaacattgctgatagnagctttggatct 807
||||||||||| |||| |||||||||| ||||||||| ||||||||| ||||||||||||
Sbjct: 12632 cccaagaaacc-ttttccccggttctg-tgttcaacaatgctgatag-agctttggatct 12688
Query: 808 ataccngtgagtctggtcgaagtgnattatagagggtatgtagtcaccatggaagaattt 867
||| | |||||||| ||||||||| ||||||||||||||| |||||| ||| |||||||
Sbjct: 12689 ata-cggtgagtct-gtcgaagtggattatagagggtatgaagtcacagtgg-agaattt 12745
Query: 868 ttttagattattgactgtatgaatgggaatgaagatcattcccaaatcaaagagattgat 927
| ||||||||||||||| || ||||| |||||||||| |||||||||||||||||||||
Sbjct: 12746 tattagattattgactg-atagatggg-atgaagatca-tcccaaatcaaagagattgat 12802
Query: 928 g 928
|
Sbjct: 12803 g 12803
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6485
Number of Sequences: 1807
Number of extensions: 6485
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)