BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZC05RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1650 1552 0.0
>3x_Contig1650
Length = 11257
Score = 1552 bits (783), Expect = 0.0
Identities = 832/843 (98%), Gaps = 4/843 (0%)
Strand = Plus / Minus
Query: 47 cttagatggtaattataatgtggtactgttgaagaagaaggacgcaagaacgaaaaaatt 106
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 7095 cttagatggtaattataatgtggaactgttgaagaagaaggacgcaagaacgaaaaaatt 7036
Query: 107 tgaaagaatgaaagccgttaccaatcaacctgtattaccaacaattcagagtactgaact 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7035 tgaaagaatgaaagccgttaccaatcaacctgtattaccaacaattcagagtactgaact 6976
Query: 167 aacaccattaacgctaacaatggcaaacgataacagattgttgaataaaactctacagga 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6975 aacaccattaacgctaacaatggcaaacgataacagattgttgaataaaactctacagga 6916
Query: 227 agaagaaacttctgctaacagtggtcgaccaacctcgaacagaacaagctcaaagaattt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6915 agaagaaacttctgctaacagtggtcgaccaacctcgaacagaacaagctcaaagaattt 6856
Query: 287 attcagtatcaacaagcagcataacacatcttcctctacctctggcttttttaaactcaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6855 attcagtatcaacaagcagcataacacatcttcctctacctctggcttttttaaactcaa 6796
Query: 347 aaattcctcaaaatcttctctcaacaatggccagaaatctcctaaacttgggagtttatc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6795 aaattcctcaaaatcttctctcaacaatggccagaaatctcctaaacttgggagtttatc 6736
Query: 407 caaaccatcaaataacgtttctggaaataacagttacaaagatctctttgctggttccta 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6735 caaaccatcaaataacgtttctggaaataacagttacaaagatctctttgctggttccta 6676
Query: 467 ctataaatataaggtatggagaagacaacaaatgtcattcatcaataaacacgagaggat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6675 ctataaatataaggtatggagaagacaacaaatgtcattcatcaataaacacgagaggat 6616
Query: 527 gttggtcattgatggtgactacgtttatataagtgggcctgatggtgatttcaattggac 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6615 gttggtcattgatggtgactacgtttatataagtgggcctgatggtgatttcaattggac 6556
Query: 587 acacgaaaacgtcaagacgaaatcgttccatataagccaaattaccctggtgaaaaggtc 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6555 acacgaaaacgtcaagacgaaatcgttccatataagccaaattaccctggtgaaaaggtc 6496
Query: 647 taagcgcgttccagaatatttcaagatttttgttcacagacctgatagagaacggagata 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6495 taagcgcgttccagaatatttcaagatttttgttcacagacctgatagagaacggagata 6436
Query: 707 ttatttcgaagctgtgtcggctgaagaatgtgtgaaaatcattactaggttgcaaaacct 766
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 6435 ttatttcgaagctgtgtcggctgaagaatgtgtggaaatcattactaggttgcaaaacct 6376
Query: 767 tattagagtgtacaggatgaatcanaaagtg-acaattgcgaaagaaatgattgatatgc 825
||||||||||||||| |||||||| |||||| |||||||||||||||||||| |||||||
Sbjct: 6375 tattagagtgtacagaatgaatca-aaagtgaacaattgcgaaagaaatgatagatatgc 6317
Query: 826 aacaaactgcatacagtattatacttaagggggcttgtatttaaaaattaattgtaaaga 885
|||||||||||||||||| ||||| | |||| |||||||||| |||||||||||||||||
Sbjct: 6316 aacaaactgcatacagta-tatacctcagggtgcttgtattt-aaaattaattgtaaaga 6259
Query: 886 aat 888
|||
Sbjct: 6258 aat 6256
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8711
Number of Sequences: 1807
Number of extensions: 8711
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)