BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZC06FM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1714 1449 0.0
>3x_Contig1714
Length = 18873
Score = 1449 bits (731), Expect = 0.0
Identities = 809/826 (97%), Gaps = 7/826 (0%)
Strand = Plus / Plus
Query: 89 ctattctatgacattttttttctacttcctcttattcatccaagttaaaaatcggattgt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3985 ctattctatgacattttttttctacttcctcttattcatccaagttaaaaatcggattgt 4044
Query: 149 tagtttgcaatcgcagtcttttcttcaacagcgaacggccagcaaatgcgtttttgcagg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4045 tagtttgcaatcgcagtcttttcttcaacagcgaacggccagcaaatgcgtttttgcagg 4104
Query: 209 gtaacaacaatttgacgttataattactgcatgagattcaaacttgcgccttcactcttg 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4105 gtaacaacaatttgacgttataattactgcatgagattcaaacttgcgccttcactcttg 4164
Query: 269 tcgaatttacgaggcctaaaactttgcgtagctcgaagatagcctgaaagttacgaaggt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4165 tcgaatttacgaggcctaaaactttgcgtagctcgaagatagcctgaaagttacgaaggt 4224
Query: 329 accatagaaaaaagtaaaattggatggatgcacgaaaaagaaacagattgaaatttgatt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4225 accatagaaaaaagtaaaattggatggatgcacgaaaaagaaacagattgaaatttgatt 4284
Query: 389 aatagtcacttttaagattgaccaacgaataaatgttggttaaattagagattggaaata 448
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 4285 aatagtcacttttaagattgaccaacgaataaatgttggttaaattagagattggacata 4344
Query: 449 atcaatagaagaagctagcgaagttttttgctgaaagtgtttaaacagcgtggaagttca 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4345 atcaatagaagaagctagcgaagttttttgctgaaagtgtttaaacagcgtggaagttca 4404
Query: 509 cacgaacatcagggcctgatttactaacagttctaatttcaacaaaaaattacgatctaa 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4405 cacgaacatcagggcctgatttactaacagttctaatttcaacaaaaaattacgatctaa 4464
Query: 569 gattagacattaattttaaaggaataaaaaccacttaattgattaatttcttacctataa 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4465 gattagacattaattttaaaggaataaaaaccacttaattgattaatttcttacctataa 4524
Query: 629 ctaagagaggtaaaattagagtcaattataaacttaaacatcaattgccattcatttagt 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4525 ctaagagaggtaaaattagagtcaattataaacttaaacatcaattgccattcatttagt 4584
Query: 689 gcgattcttttcattagtacacatagttagaaaggatccaatcgggtaaaaaacctcatt 748
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4585 gcgattcttttcattattacacatagttagaaaggatccaatcgggtaaaaaacctcatt 4644
Query: 749 gtttttattttactttttaagtccccccccgttgctgcttttaaagaaagcaaagaagtt 808
| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 4645 g-ttttattttac-ttttaagtccccccccgttgctgcttttaaagaagcaaaagaag-t 4701
Query: 809 gaaaataaatccaataggttagttcattcgttttgaacacccttttacgcttgaaaaaat 868
|||||||||||||||||||||||||| |||||| ||||||| ||||||||| | |||||
Sbjct: 4702 gaaaataaatccaataggttagttca-tcgtttgaaacaccc-tttacgcttaagaaaat 4759
Query: 869 acaaacttccgntatgtctaattatcactncctactgctcctatca 914
||||||||||| ||||||| ||||||||| ||||||||||||||||
Sbjct: 4760 acaaacttccgttatgtct-attatcact-cctactgctcctatca 4803
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7569
Number of Sequences: 1807
Number of extensions: 7569
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)