BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZC06RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1411 1364 0.0
>3x_Contig1411
Length = 7271
Score = 1364 bits (688), Expect = 0.0
Identities = 760/780 (97%), Gaps = 4/780 (0%)
Strand = Plus / Minus
Query: 44 gcttaaacaaacc-catttaaaataaaacaaaaagagacaacacagagaggtaaattggg 102
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 4389 gcttaaacaaaccacatttaaaagaaaacaaaaagagacaacacagagaggtaaattggg 4330
Query: 103 tgccttccattgatttgttgctccaatgataaacaagacccgtgaaactaaactcaggga 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4329 tgccttccattgatttgttgctccaatgataaacaagacccgtgaaactaaactcaggga 4270
Query: 163 cgattttggtgtgaattttctgggttctttgtcacataaacctaaactgtttnnctgnnt 222
|||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 4269 cgattttggtgtgaattttctgggttctttgtcacataaacctaaactgtcgttcagttc 4210
Query: 223 tactaaaaatattggcggcaatgggaacgatcggtttattcctaaaaccacatccaaaaa 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4209 tactaaaaatattggcggcaatgggaacgatcggtttattcctaaaaccacatccaaaaa 4150
Query: 283 gagttattactcgtcttcacaattgcaaaattttctgactagtcttgaacaattggttga 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4149 gagttattactcgtcttcacaattgcaaaattttctgactagtcttgaacaattggttga 4090
Query: 343 tccgctgttgcaatccagaagcccatctcctgaattcttcatgggccatgacttgcccgt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4089 tccgctgttgcaatccagaagcccatctcctgaattcttcatgggccatgacttgcccgt 4030
Query: 403 gaacaccttattgacacaagaaatatcttctatcctagattcaggtgagaagaagagtaa 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4029 gaacaccttattgacacaagaaatatcttctatcctagattcaggtgagaagaagagtaa 3970
Query: 463 gaaaaaagtatccaggcataccaaacagcataggaaatatatggctgatgcactagggtt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3969 gaaaaaagtatccaggcataccaaacagcataggaaatatatggctgatgcactagggtt 3910
Query: 523 cccagattacaatagggttctccaattttctcacatgataccatcgttgactattccatc 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3909 cccagattacaatagggttctccaattttctcacatgataccatcgttgactattccatc 3850
Query: 583 gttatctgtggatccattaatttcaattctaccaccaccagaagcgctgaaatatgcaaa 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3849 gttatctgtggatccattaatttcaattctaccaccaccagaagcgctgaaatatgcaaa 3790
Query: 643 cgctcagttatcgtcatggctcaataacaaagatgttgagaaacagagaatcagcaagag 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3789 cgctcagttatcgtcatggctcaataacaaagatgttgagaaacagagaatcagcaagag 3730
Query: 703 agcagaataaagggtcccatttagagtccttgaggccccacatttgcgggaagattttta 762
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3729 agcagaatcaagggtcccatttagagtccttgaggccccacatttgcggaaagattttta 3670
Query: 763 ttccaattcttggggattggtctcatggccctaattaaggtccctgtttgcccttgatac 822
|||||| ||||| |||||||||||||| | |||| ||| ||| ||| |||||||||||||
Sbjct: 3669 ttccaa-tcttgtggattggtctcatgccactaa-taatgtcgctg-ttgcccttgatac 3613
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7587
Number of Sequences: 1807
Number of extensions: 7587
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)