BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZC08FM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1363 908 0.0
>3x_Contig1363
Length = 5182
Score = 908 bits (458), Expect = 0.0
Identities = 520/534 (97%), Gaps = 5/534 (0%)
Strand = Plus / Minus
Query: 335 atttatattctatatgatattattaagatcaaggaagatgtactatgtcattaaggtttt 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4944 atttatattctatatgatattattaagatcaaggaagatgtactatgtcattaaggtttt 4885
Query: 395 caataaaggtttctttcgaaatatctggattatctagttgccaaataaggattctgtcta 454
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4884 caataaaggtgtctttcgaaatatctggattatctagttgccaaataaggattctgtcta 4825
Query: 455 atgtttctcccatccaaatgccaggtttcctatccagtaatttcgctagttctttaccgt 514
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4824 atgtgtctcccatccaaatgccaggtttcctatccagtaatttcgctagttctttaccgt 4765
Query: 515 tgatgatatgctttaaagtatagacatcgtctagtttgcaatcgtggacatgcttataaa 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4764 tgatgatatgctttaaagtatagacatcgtctagtttgcaatcgtggacatgcttataaa 4705
Query: 575 attcgtcataatgtggaattggctcatctccatggcgtaaataatccaaacatagattat 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4704 attcgtcataatgtggaattggctcatctccatggcgtaaataatccaaacatagattat 4645
Query: 635 agaaatgaaccatttgccaattcttaccaagttttctcaaagcaaaacccaactccgatc 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4644 agaaatgaaccatttgccaattcttaccaagttttctcaaagcaaaacccaactccgatc 4585
Query: 695 ttttcattgattttccattcttaactaaattatgataggaatcctcagatttaacacaag 754
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 4584 ttttcattgattttccattcttaactaaattatgataggaatcctcagattcaacacaag 4525
Query: 755 cgaatacgttgtctacttgagtatta-ggaagtttaagcctt-ttttgtaataacgcc-g 811
||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
Sbjct: 4524 cgataacgttgtctacttgagtattagggaagtttaagccttcttttgtaataacgccag 4465
Query: 812 ct-aaggtatcgaatttttaggcttgcttggatctggg-ccttttatcctttga 863
|| |||||||||||||||||||||| |||||||||| ||||| |||||||||
Sbjct: 4464 ctaaaggtatcgaatttttaggctttgctggatctgggccctttaatcctttga 4411
Score = 192 bits (97), Expect = 8e-49
Identities = 173/185 (93%), Gaps = 10/185 (5%)
Strand = Plus / Minus
Query: 133 acccttcttttcattcttgcacccattagtattgatatctaactagtgtttcaaaagaac 192
|||||||||| |||||| ||||||||| |||| |||||||| |||||||| ||||||| |
Sbjct: 5136 acccttctttgcattct-gcacccatt-gtat-gatatcta-ctagtgtt-caaaaga-c 5083
Query: 193 catttcgaacgatcctttttaaaccctcttagggggtaaaaaagtcatcttctgctgagg 252
|||||||| |||||| |||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 5082 catttcga-cgatcccttttaa-ccctcttagggg-taaaaaagtcatcttctgctgagg 5026
Query: 253 cttgcaatcacctcaatttgataataatttaaagctggtaggtaaataagatgctaatta 312
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5025 ct-gcaatcacctcaatttgataataatttaaagctggtaggtaaataagatgctaatta 4967
Query: 313 gtggt 317
|||||
Sbjct: 4966 gtggt 4962
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7330
Number of Sequences: 1807
Number of extensions: 7330
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)