BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZC08RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1488 1491 0.0
>3x_Contig1488
Length = 9807
Score = 1491 bits (752), Expect = 0.0
Identities = 805/816 (98%), Gaps = 5/816 (0%)
Strand = Plus / Plus
Query: 49 ttgaaagagaggtgagaactagttacacatcgtttcaccttctcaccgatcttcaaaaag 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5197 ttgaaagagaggtgagaactagttacacatcgtttcaccttctcaccgatcttcaaaaag 5256
Query: 109 acaacaatttcatctatgcttgagttatcaccttttggttctggtgctcctgtcatggga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5257 acaacaatttcatctatgcttgagttatcaccttttggttctggtgctcctgtcatggga 5316
Query: 169 tgataatctacggatgaagcagaagagattcgagaaggctgtctttccattttaatgctt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5317 tgataatctacggatgaagcagaagagattcgagaaggctgtctttccattttaatgctt 5376
Query: 229 tctgtatcagaaacattggccgctgctgccgctgcagcagcggctggaactgctaaattt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5377 tctgtatcagaaacattggccgctgctgccgctgcagcagcggctggaactgctaaattt 5436
Query: 289 ttagacgttggggaattcgatggatctgaagctgtttggttggctaatttcgccatatga 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5437 ttagacgttggggaattcgatggatctgaagctgtttggttggctaatttcgccatatga 5496
Query: 349 tacgctgaaaacctcttcgaggctcttctttgcagattatttccctttttcaattgagtt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5497 tacgctgaaaacctcttcgaggctcttctttgcagattatttccctttttcaattgagtt 5556
Query: 409 aacgcatcgctttcagaacccttgggaacttctaacgtaggtatctgttttgtttcaata 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5557 aacgcatcgctttcagaacccttgggaacttctaacgtaggtatctgttttgtttcaata 5616
Query: 469 tgagctgaagtagatgtcggtcccgcgccagccaaagatgtcgttgcgctgactacggat 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5617 tgagctgaagtagatgtcggtcccgcgccagccaaagatgtcgttgcgctgactacggat 5676
Query: 529 gaaacggaagatctttgaggagtatgctgatatttcaaagcatcttcattcctgctcagt 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5677 gaaacggaagatctttgaggagtatgctgatatttcaaagcatcttcattcctgctcagt 5736
Query: 589 tttatcatcgcctgtttaaccttaagtttctccaagagtttaactataatatctctgatc 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5737 tttatcatcgcctgtttaaccttaagtttctccaagagtttaactataatatctctgatc 5796
Query: 649 tgcggtaggtatttattcaacgtttcctcagatgcagtctctttcaatgccaccttcaat 708
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 5797 tgcggtaggtatttattcaacgtttcctcagatgcagtctctctcaatgccacctccaat 5856
Query: 709 attcttcgaaggtcttttggcacatcgcccagatcccgaatatcaattctagcatgggta 768
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 5857 attcttcgaaggtcttttggcacatcgccaagatccgaaatatcaattctagcatgggta 5916
Query: 769 aaatgtctacttgactaacttgaaatcattacccaattgaacatacacattcggaaacat 828
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 5917 aaatgtctac-tgactaacttgaaatcattacccaattgaacatacaca-tcggaaaca- 5973
Query: 829 ttaccctgcggtaactttgccccttggaccattgcg 864
|||| || ||||||||||| ||||||||||||||||
Sbjct: 5974 ttacgct-cggtaactttg-cccttggaccattgcg 6007
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6609
Number of Sequences: 1807
Number of extensions: 6609
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)