BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZC09FM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1338 1530 0.0
>3x_Contig1338
Length = 8134
Score = 1530 bits (772), Expect = 0.0
Identities = 809/816 (99%), Gaps = 4/816 (0%)
Strand = Plus / Plus
Query: 87 aatgcgaatttgttaactattttggaattttgcttctcatagctagctattatctgtact 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5322 aatgcgaatttgttaactattttggaattttgcttctcatagctagctattatctgtact 5381
Query: 147 tgcatcatattcgtcgaagtataggacaatatatggtcatataaaggaatggattagtcc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5382 tgcatcatattcgtcgaagtataggacaatatatggtcatataaaggaatggattagtcc 5441
Query: 207 aatgcagacgtttcgcaaagtatgtagctgctacgttcaaatatctaattcagcaaagtc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5442 aatgcagacgtttcgcaaagtatgtagctgctacgttcaaatatctaattcagcaaagtc 5501
Query: 267 acgtgctagaataacgatagaggacataaactgagagatcctcacaaccaagcaatctgt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5502 acgtgctagaataacgatagaggacataaactgagagatcctcacaaccaagcaatctgt 5561
Query: 327 gtacgactccgcgtagaattaaagacaaagaagctctgactttgtcaaatcgtcaagaaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5562 gtacgactccgcgtagaattaaagacaaagaagctctgactttgtcaaatcgtcaagaaa 5621
Query: 387 ctcataaattgagacgaaagaacacaaatcagttaaagcatcgtctaatcttaatgctgt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5622 ctcataaattgagacgaaagaacacaaatcagttaaagcatcgtctaatcttaatgctgt 5681
Query: 447 ttaaacaaccggaatggctacaaacaatctccctgctacctaattaaaccgaaagattac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5682 ttaaacaaccggaatggctacaaacaatctccctgctacctaattaaaccgaaagattac 5741
Query: 507 attttccctagaaggaccctggcttaatcaggactgtactaaattcaatagggtccacaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5742 attttccctagaaggaccctggcttaatcaggactgtactaaattcaatagggtccacaa 5801
Query: 567 ctgcaaaaacatagatctattcttactaatcgttcaggtattttttcaaagacgctgaca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5802 ctgcaaaaacatagatctattcttactaatcgttcaggtattttttcaaagacgctgaca 5861
Query: 627 gaattctgcacgtctcaatctgtcgggagtcattatgtcttttggaagacacgctgattc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5862 gaattctgcacgtctcaatctgtcgggagtcattatgtcttttggaagacacgctgattc 5921
Query: 687 attaaattgcagtcgccaaagaaaatgttagaaccaagatccagccgttttgtcgagaag 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5922 attaaattgcagtcgccaaagaaaatgttagaaccaagatccagccgttttgtcgagaag 5981
Query: 747 ttcgtctctggtagggctgtgtaattcttccgttcaaaaaaattttgtaaccagggaaat 806
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 5982 ttcgtctctggtagggctgtgtaattcttccgttcaaagaaattttgtaaccagggaaat 6041
Query: 807 gaaaggtcc-atgtttctggtatctggggaa-tgttaccttatgtgaacgtcta-tgaat 863
||||||||| |||||||||||||||| |||| |||||||||||||||||||||| |||||
Sbjct: 6042 gaaaggtccaatgtttctggtatctgtggaattgttaccttatgtgaacgtctactgaat 6101
Query: 864 ttattgtgatgtcttcgatatgc-agcttaccccag 898
| ||||||||||||||||||||| ||||||||||||
Sbjct: 6102 taattgtgatgtcttcgatatgcaagcttaccccag 6137
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5520
Number of Sequences: 1807
Number of extensions: 5520
Number of successful extensions: 24
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)