BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZC09RM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig332 724 0.0
3x_Contig798 357 3e-98
>3x_Contig332
Length = 1517
Score = 724 bits (365), Expect = 0.0
Identities = 422/436 (96%), Gaps = 4/436 (0%)
Strand = Plus / Minus
Query: 463 ccgctatgccaagacatatcataccaaagtcagcgtttggacaatcatttgcatgatcag 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1514 ccgctatgccaagacatatcataccaaagtcagcgtttggacaatcatttgcatgatcag 1455
Query: 523 agtctgaagtcaataatcgtattagatcccattaccatcggtgaacgtggctcaattgac 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1454 agtctgaagtcaataatcgtattagatcccattaccatcggtgaacgtggctcaattgac 1395
Query: 583 gtaaaacttccgattttgaacccgcatattattccgattattgagccatatcagtaccat 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1394 gtaaaacttccgattttgaacccgcatattattccgattattgagccatatcagtaccat 1335
Query: 643 gagaaggaagcttttaagaaattggctggcgatccatctcgattcttatcatctctagtg 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1334 gagaaggaagcttttaagaaattggctggcgatccatctcgattcttatcatctctagtg 1275
Query: 703 agtaacttgcccataaatatcgacaaggtgtttcttattagcaagtatggtgaattgccg 762
|||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||
Sbjct: 1274 agtaacttgcccataaatatcgacaaggtgttccttatcagcaagtatggtggattgccg 1215
Query: 763 tctgtggaaagacatacaaacagccattgtctttttaaatttgtcacaag-atttcgaga 821
|||||||||||||||||||||||||| ||||||| ||||||||||||||| || ||||||
Sbjct: 1214 tctgtggaaagacatacaaacagcca-tgtctttgtaaatttgtcacaagaatatcgaga 1156
Query: 822 attgagaaacagttattcataatc-attggagaaactagnatttattcaagtggataata 880
||||||||||||||| ||| |||| |||||||||||||| || |||||||||||||||||
Sbjct: 1155 attgagaaacagtta-tcaaaatcaattggagaaactagaatctattcaagtggataata 1097
Query: 881 ctgagcagaaattggt 896
||||| |||| |||||
Sbjct: 1096 ctgagaagaatttggt 1081
>3x_Contig798
Length = 3073
Score = 357 bits (180), Expect = 3e-98
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 47 taaactggcagttttctctgatgacttgactcattgataaaactagaataaatgatggtt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2894 taaactggcagttttctctgatgacttgactcattgataaaactagaataaatgatggtt 2953
Query: 107 ttatacactttccatatttgcagataaatggtttgatctcatcatataacgtccaaaggc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2954 ttatacactttccatatttgcagataaatggtttgatctcatcatataacgtccaaaggc 3013
Query: 167 acattttgtgggctagtgctatgatcaaaacatggattaggtgtttgaccacagaggtca 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3014 acattttgtgggctagtgctatgatcaaaacatggattaggtgtttgaccacagaggtca 3073
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6217
Number of Sequences: 1807
Number of extensions: 6217
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 2
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)