BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZC10FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1551 1370 0.0
>3x_Contig1551
Length = 9073
Score = 1370 bits (691), Expect = 0.0
Identities = 759/777 (97%), Gaps = 4/777 (0%)
Strand = Plus / Plus
Query: 86 ttaacgattcttctctctttacagatgatctcaaatttgtccataattgaatctcagatt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1933 ttaacgattcttctctctttacagatgatctcaaatttgtccataattgaatctcagatt 1992
Query: 146 aacccaagcgggtccaaacaattgatacaaaatgcatccttgtgccatatcgcatcactg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1993 aacccaagcgggtccaaacaattgatacaaaatgcatccttgtgccatatcgcatcactg 2052
Query: 206 gtcttggttctgaattatattcgtgccgtatataaccgacaaagaacaatcaagggcaca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2053 gtcttggttctgaattatattcgtgccgtatataaccgacaaagaacaatcaagggcaca 2112
Query: 266 actaacgttgattcctgtttagatatcagtttagggttatatctgcaccatactgtgtta 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2113 actaacgttgattcctgtttagatatcagtttagggttatatctgcaccatactgtgtta 2172
Query: 326 ccgagagtcacacatgagctcgttcttatattttctgatgcatacatgaatcgtgaagac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2173 ccgagagtcacacatgagctcgttcttatattttctgatgcatacatgaatcgtgaagac 2232
Query: 386 gatgggtcggccgttgtgtccagtgatgtagatcttcagaaattcattgctacgtttgat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2233 gatgggtcggccgttgtgtccagtgatgtagatcttcagaaattcattgctacgtttgat 2292
Query: 446 acgtatttgcaaactgacaccgacgtgtcatttaatgccgttttagcttacaggtatttc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2293 acgtatttgcaaactgacaccgacgtgtcatttaatgccgttttagcttacaggtatttc 2352
Query: 506 aaattggttcatgacaccttcaaaaatgaacgtgggttggaattagacaacttactcaat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2353 aaattggttcatgacaccttcaaaaatgaacgtgggttggaattagacaacttactcaat 2412
Query: 566 caatcatacttgtttattgtatcggacgagttttccactagcattattcaggcatttgac 625
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2413 caatcatacttgtttattgtatcggacgagttttccactagcattatccaggcatttgac 2472
Query: 626 tggtcattgccacccaccaatcaagaatcacatattctcgatatgaatgcacttncttta 685
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2473 tggtcattgccacccaccaatcaagaatcacatattctcgatatgaatgcacttccttat 2532
Query: 686 tgcattaggggataacgatctattttttgattctgcgcttgacatgtttgatgatgaaat 745
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 2533 ggcatta-gggataacgatctatttcttgattctgcgcttgacatgtttgatgatg-aat 2590
Query: 746 tttaaccgttctttgcgtaattcaaaactaaatgatagaactaacttaacggttttatca 805
||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2591 tttcaacgttctttgcgtagttcaaaactaaatgatagaactaacttaacggttttatca 2650
Query: 806 tttttatgacttttccttcggttctggtaactttatattatggnatattattatgac 862
||||||||||||| ||||| |||| || |||||||||||| | |||||||||||||
Sbjct: 2651 gttttatgactttttcttcgtttct-gttactttatattat-gtatattattatgac 2705
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6216
Number of Sequences: 1807
Number of extensions: 6216
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)