BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZC10RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1692 1217 0.0
>3x_Contig1692
Length = 16448
Score = 1217 bits (614), Expect = 0.0
Identities = 684/701 (97%), Gaps = 5/701 (0%)
Strand = Plus / Plus
Query: 59 caagtctttgcaagatatctttgccattttgggtatggatgaattgtccgaacaagataa 118
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 4729 caagtctttgcaagatatcattgccattttgggtatggatgaattgtccgaacaagataa 4788
Query: 119 gttgaccgtcgaaagagctagaaagattcaaagattcttgtctcaacctttcgctgtcgc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4789 gttgaccgtcgaaagagctagaaagattcaaagattcttgtctcaacctttcgctgtcgc 4848
Query: 179 tgaagtcttcactggtatcccaggtagattggtcagattaaaggacaccatctcttcttt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4849 tgaagtcttcactggtatcccaggtagattggtcagattaaaggacaccatctcttcttt 4908
Query: 239 caaggctgtcttggacggtaagtacgatcacttgccagaaaacgccttctacatggttgg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4909 caaggctgtcttggacggtaagtacgatcacttgccagaaaacgccttctacatggttgg 4968
Query: 299 tggtattgaagatgttgttgctaaggctgaaaagttggctgctgaagctaattaagaacc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4969 tggtattgaagatgttgttgctaaggctgaaaagttggctgctgaagctaattaagaacc 5028
Query: 359 tctcactccctctgctcttttaaattgaaaagaaaagatgacagaaactagaagggaata 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5029 tctcactccctctgctcttttaaattgaaaagaaaagatgacagaaactagaagggaata 5088
Query: 419 ataacatctctttctagctttctttaactctttttttattactattatcacagagtggtg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5089 ataacatctctttctagctttctttaactctttttttattactattatcacagagtggtg 5148
Query: 479 tagagtgtcgtaagttaaaattagatttactcattccaaccaactttatcaacttataaa 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5149 tagagtgtcgtaagttaaaattagatttactcattccaaccaactttatcaacttataaa 5208
Query: 539 actctaaaccaaaagaaccgaaatagcanatatcaatcgccttcaaagaatagttgcata 598
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 5209 actctaaaccaaaagaacgaaaatagcaaatatcaatcgccttcaaagaatagttgcata 5268
Query: 599 catgtttattttttccttttctattttgg-aatgtctggtgcc-ttcccattca-aaaac 655
||||||||||||||||||||||||||||| ||||||||||||| |||| ||||| |||||
Sbjct: 5269 catgtttattttttccttttctattttggaaatgtctggtgcctttccaattcagaaaac 5328
Query: 656 aggtttgagatgcgtgaaatgtttttaaacaacacattatgaatatgacgaaatttcttg 715
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 5329 aggtttgagatgcgtgaaatgtttttaaacaacacattatgatgatgacgaaatttc-tg 5387
Query: 716 tagttggataaatcctttttggcttaacctaataagataaa 756
||||||||| || |||||| || ||| |||||||||||||
Sbjct: 5388 tagttggattaaatcttttt-gcctaaactaataagataaa 5427
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,690
Number of Sequences: 1807
Number of extensions: 10690
Number of successful extensions: 98
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)