BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZC11FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig916 1318 0.0
>3x_Contig916
Length = 3568
Score = 1318 bits (665), Expect = 0.0
Identities = 701/709 (98%), Gaps = 3/709 (0%)
Strand = Plus / Minus
Query: 88 tgtatgcgaatttctaacacttttcagatggtctttttctctagagaagcggttatgctc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2013 tgtatgcgaatttctaacacttttcagatggtctttttctctagagaagcggttatgctc 1954
Query: 148 atgtgaccgcaaaaaaaagatcaaggtatcaaaggtactttataaataataaacgtgata 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1953 atgtgaccgcaaaaaaaagatcaaggtatcaaaggtactttataaataataaacgtgata 1894
Query: 208 taatatggcaatactataagctatatacatgcgtggactgggagccatttattctgaaga 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1893 taatatggcaatactataagctatatacatgcgtggactgggagccatttattctgaaga 1834
Query: 268 agcaggtttatccaaggccaatccttgttcttgttcctcttcttttactggttcttgtgc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1833 agcaggtttatccaaggccaatccttgttcttgttcctcttcttttactggttcttgtgc 1774
Query: 328 tgctttaagagccagctcttcttgtctaattttttccttctctgcttcgatatcaattcc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1773 tgctttaagagccagctcttcttgtctaattttttccttctctgcttcgatatcaattcc 1714
Query: 388 gaattcttcagcaatcttcttctctaatctcagtctcttttcgagtctctccttcttcat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1713 gaattcttcagcaatcttcttctctaatctcagtctcttttcgagtctctccttcttcat 1654
Query: 448 ccttgccaactctgctttgatctcgtatggttccttagggatcttatttaaagtctctgg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1653 ccttgccaactctgctttgatctcgtatggttccttagggatcttatttaaagtctctgg 1594
Query: 508 atctggccaaaaccctggaacgtttagctttttatcggtatctgtaccgatatagtacat 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1593 atctggccaaaaccctggaacgtttagctttttatcggtatctgtaccgatatagtacat 1534
Query: 568 cacagcaacag-gtgccaaaagacagaacccgaatctgaacacttcaagttgtgcgcggg 626
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1533 cacagcaacagtgtgccaaaagacagaacccgaatctgaacacttcaagttgtgcgcggg 1474
Query: 627 tatacttgaatggtagtctccatctaattttgattgtaccaactgggactatcgctgttc 686
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1473 tatacttgaatggtagtctccatctcattttgattgtaccaactgggactatcgctgttc 1414
Query: 687 gttatccttgtcttgcttcccgtccatcttctcatcttattggtctggcattcatactta 746
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1413 gttatccttgtcttgcttcccgtccatcttctcatcttatt-gtctggcattcatactta 1355
Query: 747 ccattgttccaaatcataccagcattttattgtcccaagcaggacagaa 795
| |||||||||||||||||||||| || ||||||| |||||| ||||||
Sbjct: 1354 caattgttccaaatcataccagca-ttaattgtccaaagcagaacagaa 1307
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7170
Number of Sequences: 1807
Number of extensions: 7170
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)