BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZC11RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1705 1475 0.0
>3x_Contig1705
Length = 16734
Score = 1475 bits (744), Expect = 0.0
Identities = 794/808 (98%), Gaps = 2/808 (0%)
Strand = Plus / Minus
Query: 48 taaggagtgtacaaagaaacgggacatcttcaatgagtgttccagtgataccataccttg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16283 taaggagtgtacaaagaaacgggacatcttcaatgagtgttccagtgataccataccttg 16224
Query: 108 actatgatatagtagatctcggttctgacattaaaaaaccagattttccgcaattgagtg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16223 actatgatatagtagatctcggttctgacattaaaaaaccagattttccgcaattgagtg 16164
Query: 168 aatctcatcgcattaatgaacaacagtactatatcactgaggacacgccattgaataaga 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16163 aatctcatcgcattaatgaacaacagtactatatcactgaggacacgccattgaataaga 16104
Query: 228 gaaacttcatgtatcagccttgtgctgcaaatctaatgttggataagctcaagtattgtg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16103 gaaacttcatgtatcagccttgtgctgcaaatctaatgttggataagctcaagtattgtg 16044
Query: 288 gcacagactattttgataaaagctctatcaatttgatggatagatccgacaaattagcat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16043 gcacagactattttgataaaagctctatcaatttgatggatagatccgacaaattagcat 15984
Query: 348 tttcattggacgaccattcggtgagtgtcagcgagaactgcgggtggaggagcgttagaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15983 tttcattggacgaccattcggtgagtgtcagcgagaactgcgggtggaggagcgttagaa 15924
Query: 408 gcgacgtttgtatgaaagaaggaaaaatatactgggaagtggaggtgaaaaacgtttctg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15923 gcgacgtttgtatgaaagaaggaaaaatatactgggaagtggaggtgaaaaacgtttctg 15864
Query: 468 atacatcacacatcagatgcgggataagcagaagagaggcatcaacagaaactccagtcg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15863 atacatcacacatcagatgcgggataagcagaagagaggcatcaacagaaactccagtcg 15804
Query: 528 gatgtgatttttacggttatagcattagagataaaggattgcaagttattcacgaaggcc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15803 gatgtgatttttacggttatagcattagagataaaggattgcaagttattcacgaaggcc 15744
Query: 588 gcttgcatacagttttgaaaccacacgagatgcaagcaggtgatagaatcggatttctac 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15743 gcttgcatacagttttgaaaccacacgagatgcaagcaggtgatagaatcggatttctac 15684
Query: 648 tgactttaccttccctgcagtcttaaagcgagcaagccctggattatagtttaaaacgaa 707
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 15683 tgactttaccttccctgcagtctcaaagcgagcaagccatggattatagtttaaaacgaa 15624
Query: 708 tccaagagctaaacaacgacgacagccgcaccaacaaatggaataagaaattcattaagg 767
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 15623 tccaagagctaaacaacgacgacagccgcaccaacaaaaggaataagaaattcaataagg 15564
Query: 768 aattctacaaggttttactgcgtttatgcgaacccacgaatgtagtttagagatcaattt 827
||||||||||| |||||||||||| |||||| || |||||||||| ||||||||||| ||
Sbjct: 15563 aattctacaagtttttactgcgttcatgcgagccaacgaatgtag-ttagagatcaaatt 15505
Query: 828 gcc-tcagaattaaaaatcaatggtttt 854
||| ||||| ||||||||||| |||||
Sbjct: 15504 gccatcagatataaaaatcaattgtttt 15477
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6221
Number of Sequences: 1807
Number of extensions: 6221
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)