BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZC12FM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1367 787 0.0
3x_Contig1095 127 4e-29
>3x_Contig1367
Length = 7312
Score = 787 bits (397), Expect = 0.0
Identities = 409/413 (99%)
Strand = Plus / Plus
Query: 90 tgtttgatctttgtaatacagtaggaaagataaaaaaaaaagaccaaagaggaaaaaaga 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6894 tgtttgatctttgtaatacagtaggaaagataaaaaaaaaagaccaaagaggaaaaaaga 6953
Query: 150 aaaaagctgattaatcctttgtccccttaagtcattcacatatagataacgatttggata 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6954 aaaaagctgattaatcctttgtccccttaagtcattcacatatagataacgatttggata 7013
Query: 210 gtgcaagactttaatacaagacaaattagttaaaaggagaagttagttagaaactaaagg 269
||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7014 gtgcaagacgtgaagacaagacaaattagttaaaaggagaagttagttagaaactaaagg 7073
Query: 270 caataggataaaaagacgttagaaagagagagatcattaatattgtggtagcgatttctc 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7074 caataggataaaaagacgttagaaagagagagatcattaatattgtggtagcgatttctc 7133
Query: 330 gagaagtttaaaaaacaaatctgaaaattacaaaaggttgaactattcttaagagattgt 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7134 gagaagtttaaaaaacaaatctgaaaattacaaaaggttgaactattcttaagagattgt 7193
Query: 390 caaagatgaatatgaacagaccacagttgagtacggagttaagtgagaataagtttttag 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7194 caaagatgaatatgaacagaccacagttgagtacggagttaagtgagaataagtttttag 7253
Query: 450 gattgaagaaaccagatcaaaaaggtatgagaccacaagataccattgctgtt 502
||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 7254 gattgaagaaaccagatcaaaaaggtatgagaccacaagataccactgctgtt 7306
>3x_Contig1095
Length = 5701
Score = 127 bits (64), Expect = 4e-29
Identities = 113/124 (91%), Gaps = 4/124 (3%)
Strand = Plus / Plus
Query: 776 cggtctttgaaccaattgtcaagtaatctgcataattcgggccgtttcaatgagtctcga 835
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 1 cggtctttgaaccaattgtcaagtaatctgcataattc-ggacgtttcaatgagtctcga 59
Query: 836 cccaatgtcggcattcaaaacgaaattcctcgagactcttcgtcctttaatcaagttaca 895
|||| ||||||||| || | || ||||||||||| |||||||||||| | || |||||||
Sbjct: 60 cccagtgtcggcatccagaccg-aattcctcgag-ctcttcgtccttaagtc-agttaca 116
Query: 896 attg 899
||||
Sbjct: 117 attg 120
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8819
Number of Sequences: 1807
Number of extensions: 8819
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 2
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)