BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZC12RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1095 1247 0.0
>3x_Contig1095
Length = 5701
Score = 1247 bits (629), Expect = 0.0
Identities = 699/720 (97%), Gaps = 3/720 (0%)
Strand = Plus / Minus
Query: 53 gcttcaggagattgaccacacatctttatgaaacagtcactgatcacattttcaaagttt 112
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1013 gcttcaggagattgaccacacacag--atgaaacagtcactgatcacattttcaaagttt 956
Query: 113 tagatcatcctgaaacatactcactattataccgtactaaaaaatatcctttctaaattt 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 tagatcatcctgaaacatactcactattataccgtactaaaaaatatcctttctaaattt 896
Query: 173 tccgttctatcaagcacacctacaggatgcagaaggggagtagaatcgttcttatttttt 232
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 895 tccgttctatcaagcacacctacaggatgcagaaggggagtagaatcgttcttacttcgg 836
Query: 233 taaaagaacggtgagtaaatttaaatctatgtagtgtataagcggtaaaatagagagttc 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 taaaagaacggtgagtaaatttaaatctatgtagtgtataagcggtaaaatagagagttc 776
Query: 293 tagccaccgaaggttatcaccatagtgggtaatatatataaggggagatgggagaaaacc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tagccaccgaaggttatcaccatagtgggtaatatatataaggggagatgggagaaaacc 716
Query: 353 gtggggatccactatttaggaatagaattcaacttgaaattgggtaatgaaaaaaaaaaa 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gtggggatccactatttaggaatagaattcaacttgaaattgggtaatgaaaaaaaaaaa 656
Query: 413 agcaaaggctaaattacccatcttacctggacctctcatatgtgatccttacgaactagt 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 agcaaaggctaaattacccatcttacctggacctctcatatgtgatccttacgaactagt 596
Query: 473 aggggaaacgggagggtctgtaacctcacttaatagaattgaaaataataagtataattt 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 aggggaaacgggagggtctgtaacctcacttaatagaattgaaaataataagtataattt 536
Query: 533 tgcttcatcttgcaacggtaactgaagttgtaggagagcctgctcttttcggtatcttgc 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tgcttcatcttgcaacggtaactgaagttgtaggagagcctgctcttttcggtatcttgc 476
Query: 593 taacagaagagggagacaacgacattgtatctgactcttccataggtctgccagatgatc 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 taacagaagagggagacaacgacattgtatctgactcttccataggtctgccagatgatc 416
Query: 653 gtctccttctttgaccacacattattgaggatgctctgcgtgggaaagattcgatacctg 712
||||||||||| ||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct: 415 gtctccttcttgaaccacacataatagaggatgctctgcgtggtaaagattcgatacctg 356
Query: 713 tagataattttggagttaacattttgctgccatttttcaaagggggggaagtaaccttcc 772
||||||| || |||||||||||| |||||||| || |||||| ||||| |||||||||||
Sbjct: 355 tagataaattcggagttaacattgtgctgccagttctcaaagtggggg-agtaaccttcc 297
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,713
Number of Sequences: 1807
Number of extensions: 13713
Number of successful extensions: 102
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)