BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZD01RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig344 1429 0.0
>3x_Contig344
Length = 1970
Score = 1429 bits (721), Expect = 0.0
Identities = 836/865 (96%), Gaps = 7/865 (0%)
Strand = Plus / Minus
Query: 47 ctaaaatggtacaggtcatactcggatttgttaattgccgattatttggtaaggcatggt 106
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 996 ctaaaatggtacaggtcatacacggatttgttaattgccgattatttggtaaggcatggt 937
Query: 107 tcgaattctatagatcataaaaacaagattgcatcaaactctggcatagagtttataaag 166
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 tcgaattctatagaacataaaaacaagattgcatcaaactctggcatagagtttataaag 877
Query: 167 actaggggattagaggatttgattgattacgaagttctcatagaagctaatcagatatct 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 actaggggattagaggatttgattgattacgaagttctcatagaagctaatcagatatct 817
Query: 227 atggaacttatagaaaataaaaaccttcgtcctctattagagtggattgaaaataactct 286
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 816 atggaacttatagaaaataaaaaccttcgtactctattagagtggattgaaaataactct 757
Query: 287 gcgcacttgacagaaaaaggttcgcatttacagttccaagcgttattgcaggagtacatt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gcgcacttgacagaaaaaggttcgcatttacagttccaagcgttattgcaggagtacatt 697
Query: 347 gaattagtacgatgttccgattataaagcagcaatcaggtgcttccaaacacaccttgcc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gaattagtacgatgttccgattataaagcagcaatcaggtgcttccaaacacaccttgcc 637
Query: 407 catttcgcaaatatatatcccaaagaactaaaactggcagcgggtattcttgctttcttc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 catttcgcaaatatatatcccaaagaactaaaactggcagcgggtattcttgctttcttc 577
Query: 467 aaaagctgcctcaacaatggtcgtgacgacgaagtaacaaacgaacaaaagttgtttcat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 aaaagctgcctcaacaatggtcgtgacgacgaagtaacaaacgaacaaaagttgtttcat 517
Query: 527 gcctattttagaaaacaaatgtatcgaccacatccgttgtcatcaatttcttctagtaac 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gcctattttagaaaacaaatgtatcgaccacatccgttgtcatcaatttcttctagtaac 457
Query: 587 gttgttcacaatgctgaattatgtcgatatggtccattattggaccacgagagatgggaa 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gttgttcacaatgctgaattatgtcgatatggtccattattggaccacgagagatgggaa 397
Query: 647 agtttgaataaaatgttcctacatgaattttactcactctacaaaatatcttaccacgat 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 agtttgaataaaatgttcctacatgaattttactcactctacaaaatatcttaccacgat 337
Query: 707 ccactattaatatatattatccttaggaatctctttcgttaaaaacaaaaggattgtggt 766
|||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 336 ccactattaatatata-tatccttaggaatctc-ttcgttaaaaac-aaaggattgtggt 280
Query: 767 tacacccatttccgcgcaacttaatcctcatgaaaatcccgaagtatatgaaatcattta 826
||| |||||||||||||||| | |||||||||||||| |||||| ||||| || |||
Sbjct: 279 caca-ccatttccgcgcaactaatccctcatgaaaatccggaagtaaatgaataca-tta 222
Query: 827 aatctaaccgtgtcaatacagattgtcccggtatgcaatattgacatttccccttttttt 886
|||||||| ||||||||||||||||||| ||||||||| |||||| | |||| | | |
Sbjct: 221 aatctaacgttgtcaatacagattgtccc-gtatgcaatcatgacatattccctctatct 163
Query: 887 gaaaaacttaacatttggccatcat 911
| |||||||| |||||| |||||||
Sbjct: 162 g-aaaacttaccatttgcccatcat 139
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7767
Number of Sequences: 1807
Number of extensions: 7767
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)