BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZD02FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1522 1481 0.0
>3x_Contig1522
Length = 7810
Score = 1481 bits (747), Expect = 0.0
Identities = 795/806 (98%), Gaps = 4/806 (0%)
Strand = Plus / Plus
Query: 87 tcaagcggttttcattgcaccttgttcacatagttggcatttcaagtgcattagacaact 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6391 tcaagcggttttcattgcaccttgttcacatagttggcatttcaagtgcattagacaact 6450
Query: 147 tgtatcaaaaacatatcctcaatttgtttgtcctaactgcagagcagtttgtgatttaga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6451 tgtatcaaaaacatatcctcaatttgtttgtcctaactgcagagcagtttgtgatttaga 6510
Query: 207 ggccgacttgtatagtgacgatgaagatgaagatgaggaatttgtagatgaagatgttta 266
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6511 ggccgacttggatagtgacgatgaagatgaagatgaggaatttgtagatgaagatgttta 6570
Query: 267 ttcaccgaacgagactcttgataccaggtcgagactatccccaatcaatgatgagggcac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6571 ttcaccgaacgagactcttgataccaggtcgagactatccccaatcaatgatgagggcac 6630
Query: 327 atctttctttccgagtatgaacagagatagcagaataacacatccaccaataccagaaca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6631 atctttctttccgagtatgaacagagatagcagaataacacatccaccaataccagaaca 6690
Query: 387 ggaagacgaatactgtaacgacgtcgatggcgatattcgcatgctcaactgaacaggcca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6691 ggaagacgaatactgtaacgacgtcgatggcgatattcgcatgctcaactgaacaggcca 6750
Query: 447 gtttcagatgttctgaaagttattaatcttaaagcacatatatatcatagtcatatatat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6751 gtttcagatgttctgaaagttattaatcttaaagcacatatatatcatagtcatatatat 6810
Query: 507 atatatatattcaattctttcagtattttccgtatttttttttcttacaacgtagtcctc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6811 atatatatattcaattctttcagtattttccgtatttttttttcttacaacgtagtcctc 6870
Query: 567 gtcggtgattgtgatggtataaatgtacctaaagcggtttgtaatgggaagtaaaactgg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6871 gtcggtgattgtgatggtataaatgtacctaaagcggtttgtaatgggaagtaaaactgg 6930
Query: 627 tatgttagaaaagaggagtacattacttaagatgttacatatgtttctcatttagtatct 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6931 tatgttagaaaagaggagtacattacttaagatgttacatatgtttctcatttagtatct 6990
Query: 687 gtctttctcaccaatcaatctcaaaaggacgtcctgtgcttgctgctttccaagcccata 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6991 gtctttctcaccaatcaatctcaaaaggacgtcctgtgcttgctgctttccaagcccata 7050
Query: 747 cttgtagatttggtgccctccatcgacgattttccattcctgtgttcttggatgaaaatt 806
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 7051 cttgtagatttggtgccctccatcgacgattttccattcctgtg-tcttggatg-aaatt 7108
Query: 807 tgggacaattccttttgccagttttccccattgaggaagactnttttattagcttattac 866
| |||||| ||| |||||||| |||||||||||||| ||||| ||||||||||| |||||
Sbjct: 7109 ttggacaactccctttgccag-tttccccattgagg-agacttttttattagctcattac 7166
Query: 867 tgcttacaacactcatttttaattct 892
||||||||||||||||||||| ||||
Sbjct: 7167 tgcttacaacactcatttttatttct 7192
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,893
Number of Sequences: 1807
Number of extensions: 12893
Number of successful extensions: 1653
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)