BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZD03RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1095 1437 0.0
>3x_Contig1095
Length = 5701
Score = 1437 bits (725), Expect = 0.0
Identities = 799/817 (97%), Gaps = 5/817 (0%)
Strand = Plus / Minus
Query: 48 aggagattgaccacacacttatgaaacagtcactgatcacattttcaaagttttagatca 107
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 aggagattgaccacacacagatgaaacagtcactgatcacattttcaaagttttagatca 949
Query: 108 tcctgaaacatactcactattataccgtactaaaaaatatcctttctaaattttccgttc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 tcctgaaacatactcactattataccgtactaaaaaatatcctttctaaattttccgttc 889
Query: 168 tatcaagcacacctacaggatgcagaaggggagtagaatcgttcttacttttgtaaaaga 227
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 888 tatcaagcacacctacaggatgcagaaggggagtagaatcgttcttacttcggtaaaaga 829
Query: 228 acggtgagtaaatttaaatctatgtagtgtataagcggtaaaatagagagttctagccac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 acggtgagtaaatttaaatctatgtagtgtataagcggtaaaatagagagttctagccac 769
Query: 288 cgaaggttatcaccatagtgggtaatatatataaggggagatgggagaaaaccgtgggga 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 cgaaggttatcaccatagtgggtaatatatataaggggagatgggagaaaaccgtgggga 709
Query: 348 tccactatttaggaatagaattcaacttgaaattgggtaatgaaaaaaaaaaaagcaaag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tccactatttaggaatagaattcaacttgaaattgggtaatgaaaaaaaaaaaagcaaag 649
Query: 408 gctaaattacccatcttacctggacctctcatatgtgatccttacgaactagtaggggaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gctaaattacccatcttacctggacctctcatatgtgatccttacgaactagtaggggaa 589
Query: 468 acgggagggtctgtaacctcacttaatagaattgaaaataataagtataattttgcttca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 acgggagggtctgtaacctcacttaatagaattgaaaataataagtataattttgcttca 529
Query: 528 tcttgcaacggtaactgaagttgtaggagagcctgctcttttcggtatcttgctaacaga 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tcttgcaacggtaactgaagttgtaggagagcctgctcttttcggtatcttgctaacaga 469
Query: 588 agagggagacaacgacattgtatctgactcttccataggtctgccagatgatcgtctcct 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 agagggagacaacgacattgtatctgactcttccataggtctgccagatgatcgtctcct 409
Query: 648 tcttg-accacacataatagaggatgctctgcgtggtaaagattcgatacctgtagataa 706
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tcttgaaccacacataatagaggatgctctgcgtggtaaagattcgatacctgtagataa 349
Query: 707 attcggagttaacattgtgctgccagttctc-aagtgggggagtaaccttccatgaaata 765
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 348 attcggagttaacattgtgctgccagttctcaaagtgggggagtaaccttccatgaaatc 289
Query: 766 aatttcg-tttttgtaactgaattacgtttccgttgcaattct-gtgtttagttattcaa 823
||||||| ||||||||||||| ||||||||||||||||||||| ||||| |||||| ||
Sbjct: 288 aatttcgttttttgtaactgagttacgtttccgttgcaattctggtgttaagttatccag 229
Query: 824 cagttg-gatgaccaaaatggtcgtctttgatttgcc 859
|||||| |||||| || ||||||||||| |||||||
Sbjct: 228 cagttgtgatgacgaagatggtcgtcttgaatttgcc 192
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,713
Number of Sequences: 1807
Number of extensions: 12713
Number of successful extensions: 91
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)