BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZD04FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1649 1477 0.0
>3x_Contig1649
Length = 14442
Score = 1477 bits (745), Expect = 0.0
Identities = 805/820 (98%), Gaps = 4/820 (0%)
Strand = Plus / Minus
Query: 87 attaaaaatgaagagtttatcttagaaaaaactttgaatgcaatagatgaattctcaacg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13155 attaaaaatgaagagtttatcttagaaaaaactttgaatgcaatagatgaattctcaacg 13096
Query: 147 gagggcttaagaacgttgttgtacagctataagtggatacctgctgaggaatataaagct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13095 gagggcttaagaacgttgttgtacagctataagtggatacctgctgaggaatataaagct 13036
Query: 207 tgggaggcaaaatatcatgaggcgaaaacttctttgacaaatcgttctacacagattgct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13035 tgggaggcaaaatatcatgaggcgaaaacttctttgacaaatcgttctacacagattgct 12976
Query: 267 gaagtcggaggacacatagaaaccgacttagaattactaggagctactgccatagaagac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12975 gaagtcggaggacacatagaaaccgacttagaattactaggagctactgccatagaagac 12916
Query: 327 aagctacaggaaggcgttccagaagcaattcaaaaaataagaagggctggaattaagatg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12915 aagctacaggaaggcgttccagaagcaattcaaaaaataagaagggctggaattaagatg 12856
Query: 387 tggatgctaactggtgacaagcgtgaaacagcaatcaatattggatatgcttgtaagctc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12855 tggatgctaactggtgacaagcgtgaaacagcaatcaatattggatatgcttgtaagctc 12796
Query: 447 atttacgattattcaactgttgttatcttgaaaaaaaatgacgacaacttaatctcaaaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12795 atttacgattattcaactgttgttatcttgaaaaaaaatgacgacaacttaatctcaaaa 12736
Query: 507 atgacagctttaggagaagaacttgacacaggaaaaatagcacactgtgtgttagtgatt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12735 atgacagctttaggagaagaacttgacacaggaaaaatagcacactgtgtgttagtgatt 12676
Query: 567 gacggtgcatcattggctgtgtttgaaaacaacccgactatgatgagtgtcttcattgaa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12675 gacggtgcatcattggctgtgtttgaaaacaacccgactatgatgagtgtcttcattgaa 12616
Query: 627 ctatgtactaagacagattctgtcatttgttgtcgtgcatctccttcccaaaa-gcgttt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 12615 ctatgtactaagacagattctgtcatttgttgtcgtgcatctccttcccaaaaggcgtta 12556
Query: 686 atagttactaacattangctaaaaaatagggatttagtaaacgtagccataggtgacgga 745
|||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 12555 atagttactaacattaggctaaaaaataaggatttagtaacgttagccataggtgacgga 12496
Query: 746 gctaatgatattgctatgattcaatctgccgatattgtggttggtataactggtaaagaa 805
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 12495 gctaatgatattgctatgattcaatctgccgatattggtgttggtataactggtaaagaa 12436
Query: 806 ggggttac-agcattacgttcttctgactacttcattgcacagttcagatatttactcaa 864
||||||| ||||| ||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 12435 -gggttacaagcatcacgttcttctgactactccattgcacagttcagatatctactcaa 12377
Query: 865 gttattgtttgttcatggacggtac-attatgtgagaact 903
||||||||||||||||||||||||| ||||||||||||||
Sbjct: 12376 gttattgtttgttcatggacggtacaattatgtgagaact 12337
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6148
Number of Sequences: 1807
Number of extensions: 6148
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)