BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZD05RM1.SCF screened BAC_end
(855 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1640 654 0.0
>3x_Contig1640
Length = 15521
Score = 654 bits (330), Expect = 0.0
Identities = 434/454 (95%), Gaps = 11/454 (2%)
Strand = Plus / Minus
Query: 49 taccatctgcatgatacttgtaggttcattcgattctggatca-ttaacttcttttctcg 107
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 2019 taccatctgcatgatacttggaggttcattcgattctggatcaattaacttcttttctcg 1960
Query: 108 catgatactgttaagattttccaaggattccacaatagatggatgggaatgaatctcgtc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1959 catgatactgttaagattttccaaggattccacaatagatggatgggaatgaatctcgtc 1900
Query: 168 cataagtttctgtactttgacatgagcatccagatcctcgggtgatttgttccatgacga 227
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1899 cataagtgtctgtactttgacatgagcatccagatcctcgggtgatttgtcccatgacga 1840
Query: 228 agcatatctcttgttttgtagaagaggaatgattgttctacaacttctttgagcagtaac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1839 agcatatctcttgttttgtagaagaggaatgattgttctacaacttctttgagcagtaac 1780
Query: 288 tgctccaaatgtggcagctcttagcccagaacggaatacagaacgcgataacatgttttc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1779 tgctccaaatgtggcagctcttagcccagaacggaatacagaacgcgataacatgttttc 1720
Query: 348 tatatganggattatttgaagttccacagcaaccagaaccggttaggtctcggatattct 407
||||||| |||||| ||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 1719 tatatga-ggatta-ttgaagttccacagcaa-caggaccggttaggtctcggatattct 1663
Query: 408 at-ttttcttaa-ttaatatgcaagcgg-aagaaaattgc-ccttcaca-ttttttgaag 462
|| || ||| || ||| ||||||||||| |||| |||||| | |||||| ||||||||||
Sbjct: 1662 atattgtctgaatttagtatgcaagcggaaagataattgcgctttcacatttttttgaag 1603
Query: 463 ttga-aaaatttcagaccttaac-tgatggactg 494
|||| |||||||||||||||||| ||||||||||
Sbjct: 1602 ttgataaaatttcagaccttaacatgatggactg 1569
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,469
Number of Sequences: 1807
Number of extensions: 24469
Number of successful extensions: 239
Number of sequences better than 1.0e-20: 1
length of query: 855
length of database: 10,358,551
effective HSP length: 16
effective length of query: 839
effective length of database: 10,329,639
effective search space: 8666567121
effective search space used: 8666567121
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)