BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZD06FM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1535 1570 0.0
>3x_Contig1535
Length = 11102
Score = 1570 bits (792), Expect = 0.0
Identities = 825/831 (99%), Gaps = 4/831 (0%)
Strand = Plus / Plus
Query: 87 ttgccggattgctttggtcaaaacaattctatcatttcgtgcaagacgaatggtactgcg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4009 ttgccggattgctttggtcaaaacaattctatcatttcgtgcaagacgaatggtactgcg 4068
Query: 147 gtgatccactgcaaaagcctcctccaccaaagaaccgtgcaaatgggagaaacaaggatt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4069 gtgatccactgcaaaagcctcctccaccaaagaaccgtgcaaatgggagaaacaaggatt 4128
Query: 207 ggaaacatatgtatgctgaagatatattatccttgccagataagtgggaatatccattct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4129 ggaaacatatgtatgctgaagatatattatccttgccagataagtgggaatatccattct 4188
Query: 267 ttgcttcttgggacaccgcgtttcattgtatcccattagctatgatagaccctgaatttg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4189 ttgcttcttgggacaccgcgtttcattgtatcccattagctatgatagaccctgaatttg 4248
Query: 327 caaagaaacaattggatatttttacgagagaatggtacatgcatcctaacggacaaattc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4249 caaagaaacaattggatatttttacgagagaatggtacatgcatcctaacggacaaattc 4308
Query: 387 ctgcttatgaatggaattttagtgatgtaaatcctccagttcatgcatgggctgtgtacc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4309 ctgcttatgaatggaattttagtgatgtaaatcctccagttcatgcatgggctgtgtacc 4368
Query: 447 gtgttttcaagattgaaagaaatatgtatggccgtgaggatagagtgttcttggaaagag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4369 gtgttttcaagattgaaagaaatatgtatggccgtgaggatagagtgttcttggaaagag 4428
Query: 507 tattccaaaaacttttgttgaacttcacatggtgggttaaccgcaaagatcatgacggta 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4429 tattccaaaaacttttgttgaacttcacatggtgggttaaccgcaaagatcatgacggta 4488
Query: 567 acaacgtctttgaaggtggatttttaggattggataatattggtatcttcaatagatcag 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4489 acaacgtctttgaaggtggatttttaggattggataatattggtatcttcaatagatcag 4548
Query: 627 aacctttgccaacaggtggaacattggaacaggcagactcgactggttggatggcattct 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4549 aacctttgccaacaggtggaacattggaacaggcagactcgactggttggatggcattct 4608
Query: 687 tctcattgcaaatgttaaatatcgcattagaacttgcaaaggaaaatcctgtctatgaag 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4609 tctcattgcaaatgttaaatatcgcattagaacttgcaaaggaaaatcctgtctatgaag 4668
Query: 747 acattgccactaagtttttcgaacactttttgtacatcagtgattctatgtccttcaaat 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4669 acattgccactaagtttttcgaacactttttgtacatcagtgattctatgtccttcaaat 4728
Query: 807 tcgaaaagaatagtgccagac-acttcaaa-aagaagtcaaagaaagtttgtggaatgaa 864
||||||||||||||| ||||| |||||||| | |||||||||||||||||||||||||||
Sbjct: 4729 tcgaaaagaatagtg-cagacaacttcaaagaggaagtcaaagaaagtttgtggaatgaa 4787
Query: 865 gaaga-caattctattacgatgccatttcttggggtgaaccattnaagcaa 914
||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4788 gaagaccaattctattacgatgccatttcttggggtgaaccatttaagcaa 4838
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7024
Number of Sequences: 1807
Number of extensions: 7024
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)