BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZD07FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1698 1493 0.0
>3x_Contig1698
Length = 21001
Score = 1493 bits (753), Expect = 0.0
Identities = 803/817 (98%), Gaps = 2/817 (0%)
Strand = Plus / Minus
Query: 86 atcatcagatttgcctacgttttctaagatatccaagagtttttggatatcagagttttc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10296 atcatcagatttgcctacgttttctaagatatccaagagtttttggatatcagagttttc 10237
Query: 146 gtcgaaattcaaggaatccaaccttgttgcgttagtctcgattgcaatttcgtttcgcag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10236 gtcgaaattcaaggaatccaaccttgttgcgttagtctcgattgcaatttcgtttcgcag 10177
Query: 206 cctcccgcttgattctgtttgagatattgaagagtttgatgatccaaactgagagaacgc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10176 cctcccgcttgattctgtttgagatattgaagagtttgatgatccaaactgagagaacgc 10117
Query: 266 agttgagacatgcgagactatattaacatttctgtcatcgtggatatcgtattggaaatt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10116 agttgagacatgcgagactatattaacatttctgtcatcgtggatatcgtattggaaatt 10057
Query: 326 tggcttcaattcgtccgtatgtttcatgatcaactcagtcattttaccatggaaatcgag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10056 tggcttcaattcgtccgtatgtttcatgatcaactcagtcattttaccatggaaatcgag 9997
Query: 386 agtagacattagttttaaaagttgtgcgcgtctaagcccagctggattattgcctaaatt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9996 agtagacattagttttaaaagttgtgcgcgtctaagcccagctggattattgcctaaatt 9937
Query: 446 tctcatctttgtgaatatcctcaaagcgtggtccaaatgctcgtacgtttggtcatggat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9936 tctcatctttgtgaatatcctcaaagcgtggtccaaatgctcgtacgtttggtcatggat 9877
Query: 506 accgaatgcagcgttgaacaatatcaacgtacaagcagatgtaaaaatgtattctctatc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9876 accgaatgcagcgttgaacaatatcaacgtacaagcagatgtaaaaatgtattctctatc 9817
Query: 566 catataaccaaataatgcgaccatgttctgatccattagagcccacaaagacctaatagt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9816 catataaccaaataatgcgaccatgttctgatccattagagcccacaaagacctaatagt 9757
Query: 626 attgatggatccttgtaaagaacatttcaacaaggatgagattgttcttgagtagttctt 685
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 9756 attgatggatccttgtaaagaacaattcaacaaggatgagattgttcttgagtagttctt 9697
Query: 686 caaattaatatatgcattagttacttcgaatttgtttgagctgaatggatgcgaaatgga 745
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 9696 caaattaatatatgcattagttacttcgaa-ttgtttgagctgaatggatgcgaaatgga 9638
Query: 746 acaaccatggtctgatacccaaatt-ataccttgggaatattcaatgaaaacgttggtac 804
||||| ||||||||||| ||||||| ||||||||| |||||||| |||||||||||||||
Sbjct: 9637 acaacaatggtctgatagccaaattcataccttggaaatattcagtgaaaacgttggtac 9578
Query: 805 aaagtcttgaaatcttgaaattcttttgagtgaaatcaacttgtagaaaatcaagaagag 864
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 9577 aaagtcttgaaatcttgagattcttttgagtgaaatcaacttgtagaaaatcagaaagat 9518
Query: 865 tctttcttcactcaagcaactgggtgacaatgtcctt 901
| |||| |||||||||||||||||||||||||||||
Sbjct: 9517 gcgttctccactcaagcaactgggtgacaatgtcctt 9481
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7376
Number of Sequences: 1807
Number of extensions: 7376
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)