BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZD07RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig665 1501 0.0
>3x_Contig665
Length = 2101
Score = 1501 bits (757), Expect = 0.0
Identities = 822/840 (97%), Gaps = 3/840 (0%)
Strand = Plus / Minus
Query: 48 tggaaaccggtatggtctcttgcaacactggtttgttcagtgagtgtaccattccattcg 107
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1632 tggaaaccggtatggtctcatgcaacactggtttgttcagtgagtgtaccattccattcg 1573
Query: 108 gcggtgttaaggaatccggattcggtagagagggatctttgcacggtattgaagactata 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1572 gcggtgttaaggaatccggattcggtagagagggatctttgcacggtattgaagactata 1513
Query: 168 ctgtcatcaagactatcaccatcggaaacttgcctgctccactataaattgatgggcgta 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1512 ctgtcatcaagactatcaccatcggaaacttgcctgctccactataaattgatgggcgta 1453
Query: 228 actgattataatagtagacgatatgtaccatatgtatatagaaacgtatttccagtagtg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1452 actgattataatagtagacgatatgtaccatatgtatatagaaacgtatttccagtagtg 1393
Query: 288 tagcaatttatatttatcctcggattaagagcggattaacatagcatgatataagttgag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1392 tagcaatttatatttatcctcggattaagagcggattaacatagcatgatataagttgag 1333
Query: 348 ttgattattcaacctgagttaaccagttattggaacgagaatccaattgttttctatttg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 ttgattattcaacctgagttaaccagttattggaacgagaatccaattgttttctatttg 1273
Query: 408 atagcctcgtattgactgtttcgttacgcgtagtgattgtgattacatttaacaattgat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 atagcctcgtattgactgtttcgttacgcgtagtgattgtgattacatttaacaattgat 1213
Query: 468 ttgaaaaaacgttattatggcgtaagtgaaagcttagtaacgatctgcaaagataaagcc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 ttgaaaaaacgttattatggcgtaagtgaaagcttagtaacgatctgcaaagataaagcc 1153
Query: 528 acaacagtaattagctgccactttccagtactcagtgccatccttcacttgagcttagtg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1152 acaacagtaattagctgccactttccagtactcagtgccatccttcacttgagcttagtg 1093
Query: 588 ggggttcagctgctgttgttttcccaccatggatttatatgaacaacttccgtccagtgg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 ggggttcagctgctgttgttttcccaccatggatttatatgaacaacttccgtccagtgg 1033
Query: 648 tatgattcatcaaccggaatacaagttcttactggatgccgctacctttcatgggatcac 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 tatgattcatcaaccggaatacaagttcttactggatgccgctacctttcatgggatcac 973
Query: 708 ctgcttagatttcctatcccagtcaccatctaacttgatgaagaccattantagatctat 767
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 972 ctgcttagatttcctatcccagtcaccatctaacttgatgaagaccattaatagatctat 913
Query: 768 caatgagattataagttttcaagccgctctacgaaatgaattcgaatggccattggccca 827
|||||||||||||| ||||||||||||||||||||||||||||||| | |||||||| |
Sbjct: 912 caatgagattataaagtttcaagccgctctacgaaatgaattcgaattggcattggccga 853
Query: 828 tttttagtattc-agacctcccaaccctggagggaggatgaccaaccacgatgtttcacc 886
| || || || | |||| || |||| || || |||||||||| |||||||||||||||||
Sbjct: 852 tattaag-atacaagacatcacaacact-gaaggaggatgacaaaccacgatgtttcacc 795
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5686
Number of Sequences: 1807
Number of extensions: 5686
Number of successful extensions: 26
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)