BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC26ZD08RM1.SCF screened BAC_end
         (918 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1533                                                        1570   0.0  

>3x_Contig1533 
          Length = 11082

 Score = 1570 bits (792), Expect = 0.0
 Identities = 852/866 (98%), Gaps = 5/866 (0%)
 Strand = Plus / Plus

                                                                        
Query: 48   cagaagacaattgttccaattcattggaaacta-gtggacacacaatgggaattcatcga 106
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2076 cagaagacaattgttccaattcattggaaactaagtggacacacaatgggaattcatcga 2135

                                                                        
Query: 107  cagtggccttcttcttacccaaatcataaattctgatcttagagtctggaacagctctgt 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2136 cagtggccttcttcttacccaaatcataaattctgatcttagagtctggaacagctctgt 2195

                                                                        
Query: 167  tgtatctagactttgggtaaggcttgttcttttggtatctgtaacatctattctggtctt 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 2196 tgtatctagactttgggtaaggcttgttcttttggtatctgtaacatctag-ctggtctt 2254

                                                                        
Query: 227  ctagccattttgaattactttggacggtgataggtgatcggtgttcctgtaaataataaa 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2255 ctagccattttgaattactttggacggtgataggtgatcggtgttcctgtaaataataaa 2314

                                                                        
Query: 287  caaaattgaagcgaatgatcaaaccttatgttaaagatatcgataattatcattaaatta 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2315 caaaattgaagcgaatgatcaaaccttatgttaaagatatcgataattatcattaaatta 2374

                                                                        
Query: 347  tgttctctttttattacatttgaaaatctcgatgattaccaccaactattgcaggaagct 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2375 tgttctctttttattacatttgaaaatctcgatgattaccaccaactattgcaggaagct 2434

                                                                        
Query: 407  tttgcatttgtcagaaacttgaaaaagattggaaagtcgtagcgaagtcacacggtaaga 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2435 tttgcatttgtcagaaacttgaaaaagattggaaagtcgtagcgaagtcacacggtaaga 2494

                                                                        
Query: 467  aactactgtgaaaacaaatcaaagaaaatagttactaatcacgtgctctatttcctattg 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2495 aactactgtgaaaacaaatcaaagaaaatagttactaatcacgtgctctatttcctattg 2554

                                                                        
Query: 527  tggttgtttttgtatcataaaaatatgttgaatgccaatatgtaatagtgtctgggtgtt 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2555 tggttgtttttgtatcataaaaatatgttgaatgccaatatgtaatagtgtctgggtgtt 2614

                                                                        
Query: 587  ggggatagcagtcccagatgcgttgttatgcacgtgatgctgattgaaatttcatttctt 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2615 ggggatagcagtcccagatgcgttgttatgcacgtgatgctgattgaaatttcatttctt 2674

                                                                        
Query: 647  ntccaagtcgatgagatgagatgagatgagacgagacatgatattgcagaaaattttatg 706
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2675 ttccaagtcgatgagatgagatgagatgagacgagacatgatattgcagaaaattttatg 2734

                                                                        
Query: 707  tactcggtgtttctacgataaagccaagtgcgaagaaagaagtacaaacacacatcattg 766
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2735 tactcggtgtttctacgataaagccaagtgcgaagaaagaagtacaaacacacatcattg 2794

                                                                        
Query: 767  aatctctttctctatgagacttagatactcattggnttttgtttgatagtttaagttaat 826
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2795 aatctctttctctatgagacttagatactcattgg-ttttgtttgatagtttaagttaat 2853

                                                                        
Query: 827  ctgtggtaccagcctgtcanaaatttaggag-aggttag-aaggaaaatgggaagatatc 884
            ||||||||||||||||||| |||| |||||| |||| || ||||||||||||||||||| 
Sbjct: 2854 ctgtggtaccagcctgtcagaaatataggagaaggtaagaaaggaaaatgggaagatatt 2913

                                      
Query: 885  ttgttaaacgttccaggacgaagaga 910
             ||||||||||| || ||||||||||
Sbjct: 2914 ctgttaaacgttacaagacgaagaga 2939


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8810
Number of Sequences: 1807
Number of extensions: 8810
Number of successful extensions: 516
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)