BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZD09FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1718 1550 0.0
>3x_Contig1718
Length = 19496
Score = 1550 bits (782), Expect = 0.0
Identities = 818/826 (99%), Gaps = 3/826 (0%)
Strand = Plus / Minus
Query: 89 cgcaattcttgcgaaagtggaaatgttatccaaccaacttttagcattaaatttgagaga 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13202 cgcaattcttgcgaaagtggaaatgttatccaaccaacttttagcattaaatttgagaga 13143
Query: 149 gccattactcttgaagaaacaaattcaaaactttgcattattcttaactattttgaagga 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13142 gccattactcttgaagaaacaaattcaaaactttgcattattcttaactattttgaagga 13083
Query: 209 caacgtgcttttcacgttattagaaaagattattactaccgctactcttgaataccctga 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13082 caacgtgcttttcacgttattagaaaagattattactaccgctactcttgaataccctga 13023
Query: 269 gattgatatgaacgagaagagcgaacaatcagatgcagttcgtgatttgaggtatgcttg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13022 gattgatatgaacgagaagagcgaacaatcagatgcagttcgtgatttgaggtatgcttg 12963
Query: 329 cggtattgaacttaatcggatggccctattaatgccagcatccctacaaccaatataccc 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12962 cggtattgaacttaatcggatggccctattaatgccagcatccctacaaccaatataccc 12903
Query: 389 tgatcttgaaaatgtggttgcaggcatactaccaaagttgagctctcatgaaacgatctc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12902 tgatcttgaaaatgtggttgcaggcatactaccaaagttgagctctcatgaaacgatctc 12843
Query: 449 tttcaagtcattcttattaactattgttcttaaatctaatttggagaataagggggaaaa 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12842 tttcaagtcattcttattaactattgttcttaaatctaatttggagaataagggggaaaa 12783
Query: 509 atttgcccagttagtggatcctgagtttgctgcttggtctgataaggggacagttgttgg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12782 atttgcccagttagtggatcctgagtttgctgcttggtctgataaggggacagttgttgg 12723
Query: 569 tttgacggatcttccatggttccttgaaagacttggaatagtgaaaatagcagagtattt 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12722 tttgacggatcttccatggttccttgaaagacttggaatagtgaaaatagcagagtattt 12663
Query: 629 tcagagacgtaatatcgacgaaaatagtgacttattgtccattcagatggacgaagacgg 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12662 tcagagacgtaatatcgacgaaaatagtgacttattgtccattcagatggacgaagacgg 12603
Query: 689 aaagaaacttaaagcagatttaacacagcattggcaaactatatttccagttcgtgctac 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12602 aaagaaacttaaagcagatttaacacagcattggcaaactatatttccagttcgtgctac 12543
Query: 749 tagaatgtttatccattattccatgcagagcgtcaagggcgatgttgagtttccggatgt 808
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 12542 tagaatgtttatccattattccatgcagagcgtcaagggcgatgttgag-ttccggatgt 12484
Query: 809 tacaagagttgtggaagccacgtattgtgcctatcttaccgctatat-tttagactccta 867
||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct: 12483 tacaagagttgtggaagccacgtattgtgcctatcttaccg-tatatcttaagactccta 12425
Query: 868 tttcagcttcaatcgtatcattaccctggccactgggcttcactgc 913
|| |||||||||||||||||| |||||| | |||||||||||||||
Sbjct: 12424 ttccagcttcaatcgtatcataaccctgccaactgggcttcactgc 12379
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5916
Number of Sequences: 1807
Number of extensions: 5916
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)