BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZD09RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1729 1146 0.0
3x_Contig25 117 4e-26
>3x_Contig1729
Length = 15481
Score = 1146 bits (578), Expect = 0.0
Identities = 670/694 (96%), Gaps = 5/694 (0%)
Strand = Plus / Plus
Query: 48 ttcctgtagcagttgcggtttctcagacattctattcttggatattggcaagaagcgact 107
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5475 ttcctgtagcagttgcggattctcagacattctattcttggatattggcaagaagcgact 5534
Query: 108 catggttaacgtgtacagttgtatgacctctgatggcatccgtttaaatattttatttct 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5535 catggttaacgtgtacagttgtatgacctctgatggcatccgtttaaatattttatttct 5594
Query: 168 tagaggcttcaataacttgtattcctcagtggtaactggcgtggtatgattaatgggatc 227
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 5595 tagaggcttcaataacttgtattcctcagtggtaactggcgtggtaggagtaatgggatc 5654
Query: 228 ggcgtcaagtataacagtgtttagcttaccttgaaataattgacatttaacagtgaattt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5655 ggcgtcaagtataacagtgtttagcttaccttgaaataattgacatttaacagtgaattt 5714
Query: 288 gaatatgatacttcgatgggtaatattactgttgcctttatctgcacattccattaaacc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5715 gaatatgatacttcgatgggtaatattactgttgcctttatctgcacattccattaaacc 5774
Query: 348 catcttgattattgattggagtttttcgtttaatgattccacccgatttagatatatcaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5775 catcttgattattgattggagtttttcgtttaatgattccacccgatttagatatatcaa 5834
Query: 408 tgcatgaacgtgctcattctctggtattctttcctggaaactacccaaaaaggaatcgta 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5835 tgcatgaacgtgctcattctctggtattctttcctggaaactacccaaaaaggaatcgta 5894
Query: 468 cccatagttgactttggggttagccgtaaaatctgtaaaagacagaactagcgttttacc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5895 cccatagttgactttggggttagccgtaaaatctgtaaaagacagaactagcgttttacc 5954
Query: 528 tcctgtatatttcacggtgaccgcaagtccaataactgtgtagtacctcgaactctctga 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5955 tcctgtatatttcacggtgaccgcaagtccaataactgtgtagtacctcgaactcgctga 6014
Query: 588 gagaacaatgttggacacacttactagtggaaacttgctctctgtgaaggtgactttctt 647
||||||||||||| |||| |||||||||||||||| |||||||||||||||||| |||
Sbjct: 6015 aggaacaatgttggagacacgtactagtggaaacttgttctctgtgaaggtgacttcctt 6074
Query: 648 tggagtaggaagagcatattctga-gaccacgttccttgaga-cccatttaattaatttt 705
|||||||||||||||| | ||||| ||||||| ||||||||| |||||||| || | |||
Sbjct: 6075 tggagtaggaagagcaga-tctgaggaccacg-tccttgagagcccatttacttga-ttt 6131
Query: 706 tggttctccaaatataaataccttcttgtaaatg 739
|| | |||||| ||||| ||||||||||||||
Sbjct: 6132 tgctgctccaatagtaaattccttcttgtaaatg 6165
>3x_Contig25
Length = 1081
Score = 117 bits (59), Expect = 4e-26
Identities = 196/239 (82%), Gaps = 2/239 (0%)
Strand = Plus / Plus
Query: 149 gtttaaatattttatttc-ttagaggcttcaataacttgtattcc-tcagtggtaactgg 206
||||||||||||||||| ||||||| || ||||| ||||||| | |||||||| |||
Sbjct: 591 gtttaaatattttattttgttagagggttgaataagttgtattgggtgagtggtaagtgg 650
Query: 207 cgtggtatgattaatgggatcggcgtcaagtataacagtgtttagcttaccttgaaataa 266
|||||| || ||||||||| || || |||||||| ||||||||| ||| |||| |||
Sbjct: 651 ggtggtaggagtaatgggatgggggtgaagtataagagtgtttaggttaggttgagatag 710
Query: 267 ttgacatttaacagtgaatttgaatatgatacttcgatgggtaatattactgttgccttt 326
|||| |||||| ||||||||||||||||||| || ||| ||||||||| ||||| |||
Sbjct: 711 ttgagatttaagagtgaatttgaatatgatagttgcatgtgtaatattagtgttgggttt 770
Query: 327 atctgcacattccattaaacccatcttgattattgattggagtttttcgtttaatgatt 385
|| || | ||| |||||| || |||||||||||||||| ||||| ||||||||||
Sbjct: 771 atgtggagattggattaaagggatgttgattattgattggactttttgctttaatgatt 829
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7061
Number of Sequences: 1807
Number of extensions: 7061
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 2
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)