BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZD10FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig280 1181 0.0
>3x_Contig280
Length = 1466
Score = 1181 bits (596), Expect = 0.0
Identities = 686/708 (96%), Gaps = 6/708 (0%)
Strand = Plus / Minus
Query: 227 aagcctgaagctaaatatagagaagaactaaaattagacgaggattgtcacgaaatgttg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1466 aagcctgaagctaaatatagagaagaactaaaattagacgaggattgtcacgaaatgttg 1407
Query: 287 gtgaactcatttattgagctactgttagtggggtcacaaagtaagcattcagatcttgct 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1406 gtgaactcatttattgagctactgttagtggggtcacaaagtaagcattcagatcttgct 1347
Query: 347 aactactacatttcttgtttcggttacctattagacatgaagccaaagaacggttacaaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1346 aactactacatttcttgtttcggttacctattagacatgaagccaaagaacggttacaaa 1287
Query: 407 atatgcgataggataatagtcgatctttatgatgctttgacggatcaatatgtcaattca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1286 atatgcgataggataatagtcgatctttatgatgctttgacggatcaatatgtcaattca 1227
Query: 467 gagcataggttgttaacatctttgaagcagttcaccagaatcgtcagagttttgattcaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1226 gagcataggttgttaacatctttgaagcagttcaccagaatcgtcagagttttgattcaa 1167
Query: 527 catgaattgtaccgtgtccacataacgaacatcttatcaattctaattgacaaaatcgat 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1166 catgaattgtaccgtgtccacataacgaacatcttatcaattctaattgacaaaatcgat 1107
Query: 587 ttcaacgacatttctttgaccagcaatttaatgaatagtatagtatccatttcatgcttt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1106 ttcaacgacatttctttgaccagcaatttaatgaatagtatagtatccatttcatgcttt 1047
Query: 647 attccaatagaagtatttgtgaaaccggaagaatatcttacttttgaatctaatactata 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 attccaatagaagtatttgtgaaaccggaagaatatcttacttttgaatctaatactata 987
Query: 707 ccgttcatcgagggacatctatttttcatcataccaagccgttcttcttcagatttcgaa 766
||||||||||||| ||||||||||||||||| || | || |||||||| |||||||||||
Sbjct: 986 ccgttcatcgaggaacatctatttttcatcaaacaaggcggttcttctccagatttcgaa 927
Query: 767 tacgaatcttccattctttccgatgcttttcagaacttcaacaaccacattggaaaactg 826
|||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||
Sbjct: 926 tacgaatcttccattctttccgatgc-tttcagagcttcaacaaccacatttgaaaactg 868
Query: 827 ccttgaagtatatgttcgataaactatatcagtttggttgatgttgaattaaaatgcagg 886
||| ||||||||| ||||||||||||||||| ||||||||||||| || | |||||||
Sbjct: 867 cctgaaagtatatg-tcgataaactatatcag-ttggttgatgttg-atatagatgcagg 811
Query: 887 gctaatttncaaaaatcacccaaacatcattgattttgtatacagtcc 934
|||||||| ||||||||| |||||||||| ||||| || |||||||||
Sbjct: 810 gctaattt-caaaaatcaaccaaacatcaatgattatg-atacagtcc 765
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7352
Number of Sequences: 1807
Number of extensions: 7352
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)