BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZD10RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1732 1405 0.0
>3x_Contig1732
Length = 24266
Score = 1405 bits (709), Expect = 0.0
Identities = 836/867 (96%), Gaps = 10/867 (1%)
Strand = Plus / Plus
Query: 49 ttaacgtttctataaatgaggttttaccagatccatcgagtcccagaattagtatgtcat 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5176 ttaacgtttctataaatgaggttttaccagatccatcgagtcccagaattagtatgtcat 5235
Query: 109 gctgttctcgtagattcca-tgcttgtatacactccgtgccaaatggaacatgattctat 167
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5236 gctgttctcgtagattccaatgcttgtatacactccgtgccaaatggaacatgattctat 5295
Query: 168 caacactttcgcacagcttccagggctgattctctctggctcagatcaatttttgacccg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5296 caacactttcgcacagcttccagggctgattctctctggctcagatcaatttttgacccg 5355
Query: 228 tccaaaacaggtttattcattattaaagccggaatcgtttatttaattgaatctttaatg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5356 tccaaaacaggtttattcattattaaagccggaatcgtttatttaattgaatctttaatg 5415
Query: 288 ttaaccacacggaatggaaaacaaaaagggagaaagaagaatggacggtagaatttgttt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5416 ttaaccacacggaatggaaaacaaaaagggagaaagaagaatggacggtagaatttgttt 5475
Query: 348 agaagctaggtgattcatacatttaccgtgtagctgagtgttcccatttatgtagtttat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5476 agaagctaggtgattcatacatttaccgtgtagctgagtgttcccatttatgtagtttat 5535
Query: 408 atggagaaagtatatatggctccgtttcaaactctgatcttgctctctttctgcatgacg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5536 atggagaaagtatatatggctccgtttcaaactctgatcttgctctctttctgcatgacg 5595
Query: 468 aagagacagaggaaagcaaaggattagagacgaacgattcgctgaggacggtgttatacc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5596 aagagacagaggaaagcaaaggattagagacgaacgattcgctgaggacggtgttatacc 5655
Query: 528 atttattaagcactgaactttcgatccgaagtttgtaatccaaggtagaaagagtccaac 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5656 atttattaagcactgaactttcgatccgaagtttgtaatccaaggtagaaagagtccaac 5715
Query: 588 gttccatgttagccaagtcccgtggtttcaatccggatatcaagcaccaagtctttatcg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5716 gttccatgttagccaagtcccgtggtttcaatccggatatcaagcaccaagtcttcatcg 5775
Query: 648 aaaacgtcgaatcgttgctgaacttgtgtgcaagaataagacnagacaagaagacttttt 707
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct: 5776 aaaacgtcgaatcgttgctgaacttgtgtgcaagaataagacaagacaagaaga-tcttt 5834
Query: 708 tcgagcatcttgcaaactctggcatatctgtgatggacacggttttcagcgcctttttaa 767
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||| | |
Sbjct: 5835 tcgagcatcttgcaaactctggcatatctgtgatggacacgggtttcagtgccttggt-a 5893
Query: 768 taaatctggatgaaacagatttgtaccttgaatgactaccaggttgagatgatttggaat 827
||||||| |||| ||||||| |||| |||||||||||| || ||||||||||||||| ||
Sbjct: 5894 taaatct-gatggaacagatatgtagcttgaatgacta-caagttgagatgatttgg-at 5950
Query: 828 cttttgaccacctttttgttgaaatgttaagaacaattgtttccaaatggataaattctt 887
|| ||||| |||| ||| ||||||| ||||| |||||||||| || || | |||||||
Sbjct: 5951 ctcttgacgacctcattgatgaaatg-taagatcaattgtttcgaattg--ttaattctt 6007
Query: 888 tggtttagaaaagttggaaatcaatgc 914
|||||| |||||||||||| |||||||
Sbjct: 6008 tggttt-gaaaagttggaagtcaatgc 6033
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7074
Number of Sequences: 1807
Number of extensions: 7074
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)