BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZD11FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1517 1485 0.0
3x_Contig38 967 0.0
>3x_Contig1517
Length = 8289
Score = 1485 bits (749), Expect = 0.0
Identities = 816/828 (98%), Gaps = 8/828 (0%)
Strand = Plus / Minus
Query: 83 ccagaaagttctcggttggccataagataaattaggacaaacgaaacaacacctacaaaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5056 ccagaaagttctcggttggccataagataaattaggacaaacgaaacaacacctacaaaa 4997
Query: 143 gtagcagcgaacagatcatctgcttagaatagttcactgcgaatgagcaaggtattagct 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4996 gtagcagcgaacagatcatctgcttagaatagttcactgcgaatgagcaaggtattagct 4937
Query: 203 atacaatgtcattttgcttcaagatgaagaggtcaaggagtcctgacccgataggaatcg 262
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4936 atacaatgtcatcaggcttcaagatgaagaggtcaaggagtcctgacccgataggaatcg 4877
Query: 263 ataactataagaaacaacggctaatatatgatttcgaaaacctatcgttggctcctaggg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4876 ataactataagaaacaacggctaatatatgatttcgaaaacctatcgttggctcctaggg 4817
Query: 323 gaaccgatgggataaagaaacataaaattgattcagggttgaactcattcaaagcagttg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4816 gaaccgatgggataaagaaacataaaattgattcagggttgaactcattcaaagcagttg 4757
Query: 383 taaataaaaggatgtgggatgtagttgaacgcgaattgagtggttcaaacaaaaatgata 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4756 taaataaaaggatgtgggatgtagttgaacgcgaattgagtggttcaaacaaaaatgata 4697
Query: 443 agatatatgaaagaatattcgatcatgtacgacagtttaactcgcaggtaataaaatggt 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4696 agatatatgaaagaatattcgatcatgtacgacagtttaactcgcaggtaataaaatggt 4637
Query: 503 atgactggcgatctgtggtagcaagcttgtgggtaaaatggtaccaacagcatagtccaa 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4636 atgactggcgatctgtggtagcaagcttgtgggtaaaatggtaccaacagcatagtccaa 4577
Query: 563 aattagatgaagtagatatgaatgttgagactgcagcagattccagagttgatctggcac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4576 aattagatgaagtagatatgaatgttgagactgcagcagattccagagttgatctggcac 4517
Query: 623 cgaatctcatgcatagaaatgatgagtttgatcacaatgcggacatggacattgacatgg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4516 cgaatctcatgcatagaaatgatgagtttgatcacaatgcggacatggacattgacatgg 4457
Query: 683 atctcgatacagatccgtacgcggatgcagacatggacatagagctggatgaatagtcct 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4456 atctcgatacagatccgtacgcggatgcagacatggacatagagctggatgaatagtcct 4397
Query: 743 tagacatgttttgtgaagtattattatcattttngatagaagtattaacacctatagaga 802
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 4396 tagacatg-tttgtgaagtattattatcatttt-gatagaagtattaacacctatagaga 4339
Query: 803 gagtatgtaaacaactgattttttacttgnntgaactgaattaaatgtgaaagaatat-a 861
|||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||| |
Sbjct: 4338 gagtatgtaaacaactga-tttttacttg-ttgaactgaatt-aatgtgaaagaatataa 4282
Query: 862 gagtgttaatgtcaaaattattgttgaagtattacaatggcgatgtac 909
|||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 4281 gagtgttaatgtcaaaatta-tgttgaagtattacaat-gcgatgtac 4236
>3x_Contig38
Length = 925
Score = 967 bits (488), Expect = 0.0
Identities = 522/535 (97%), Gaps = 10/535 (1%)
Strand = Plus / Minus
Query: 83 ccagaaagttctcggttggccataagataaattaggacaaacgaaacaacacctacaaaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ccagaaagttctcggttggccataagataaattaggacaaacgaaacaacacctacaaaa 470
Query: 143 gtagcagcgaacagatcatctgcttagaatagttcactgcgaatgagcaaggtattagct 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gtagcagcgaacagatcatctgcttagaatagttcactgcgaatgagcaaggtattagct 410
Query: 203 atacaatgtcattttgcttcaagatgaagaggtcaaggagtcctgacccgataggaatcg 262
|||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 409 atacaatgtcatcaggcttcaagatgaagaggtcaaggagtcctgacc----------cg 360
Query: 263 ataactataagaaacaacggctaatatatgatttcgaaaacctatcgttggctcctaggg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ataactataagaaacaacggctaatatatgatttcgaaaacctatcgttggctcctaggg 300
Query: 323 gaaccgatgggataaagaaacataaaattgattcagggttgaactcattcaaagcagttg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gaaccgatgggataaagaaacataaaattgattcagggttgaactcattcaaagcagttg 240
Query: 383 taaataaaaggatgtgggatgtagttgaacgcgaattgagtggttcaaacaaaaatgata 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 taaataaaaggatgtgggatgtagttgaacgcgaattgagtggttcaaacaaaaatgata 180
Query: 443 agatatatgaaagaatattcgatcatgtacgacagtttaactcgcaggtaataaaatggt 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 agatatatgaaagaatattcgatcatgtacgacagtttaactcgcaggtaataaaatggt 120
Query: 503 atgactggcgatctgtggtagcaagcttgtgggtaaaatggtaccaacagcatagtccaa 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 atgactggcgatctgtggtagcaagcttgtgggtaaaatggtaccaacagcatagtccaa 60
Query: 563 aattagatgaagtagatatgaatgttgagactgcagcagattccagagttgatct 617
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 aattagatgaagtagatatgaatgttgagactgcagcagattccagagttgatct 5
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6131
Number of Sequences: 1807
Number of extensions: 6131
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 2
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)