BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZD11RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1553 1027 0.0
>3x_Contig1553
Length = 8593
Score = 1027 bits (518), Expect = 0.0
Identities = 573/590 (97%), Gaps = 1/590 (0%)
Strand = Plus / Minus
Query: 59 cttcttattgggaaatccttattgtcccattttggacaaaaaa-atgacattctaaaata 117
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 5455 cttcttattgggaaatccttactgtcccattttggacatttcctatgacattctaaaata 5396
Query: 118 gggtatcggttctaataaaaaaattagtaatctcagtatacctatattaaaagaccgcac 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5395 gggtatcggttctaataaaaaaattagtaatctcagtatacctatattaaaagaccgcac 5336
Query: 178 aatcaataccacaaaggacaatcgatacactccataaagacaaccaaaggaaaccaaaaa 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5335 aatcaataccacaaaggacaatcgatacactccataaagacaaccaaaggaaaccaaaaa 5276
Query: 238 aaatgtcaccgaatctatttggaatcttcagagattatccgacaccaccagaatcagggt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5275 aaatgtcaccgaatctatttggaatcttcagagattatccgacaccaccagaatcagggt 5216
Query: 298 tctggggtactcctacttctactatagattggtgtgaggagaattatgtgatatcgccct 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5215 tctggggtactcctacttctactatagattggtgtgaggagaattatgtgatatcgccct 5156
Query: 358 atatagcggaatggtcaaacacactcactaatagtggatttattttactagcattatacc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5155 atatagcggaatggtcaaacacactcactaatagtggatttattttactagcattatacc 5096
Query: 418 tgttgtattcttcatggaaaaataaactagagacccggtttaagttggtttgtgctggtt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5095 tgttgtattcttcatggaaaaataaactagagacccggtttaagttggtttgtgctggtt 5036
Query: 478 ttggattggtcgggatcggatcctggatattccatatgactttgcaatacaagtaccagt 537
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 5035 ttggattggtcgggatcggatcctggttattccatatgactttgcaatacaagtaccagt 4976
Query: 538 tattagatgagttacctatggtttatgctacttgcattcctgcatggagcatactctgcg 597
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4975 tattagatgagttacctatggtttatgctacttgcattcctgcatggagcatattctgcg 4916
Query: 598 aagaaattgatgtaattacttagaggatcagggctctcaccaggagaaaa 647
| || ||||||||| ||| | |||||||||| ||| |||||||||||||
Sbjct: 4915 aggagattgatgtagctacgtcgaggatcaggtctcccaccaggagaaaa 4866
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6696
Number of Sequences: 1807
Number of extensions: 6696
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)