BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZD12FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1514 1511 0.0
>3x_Contig1514
Length = 10546
Score = 1511 bits (762), Expect = 0.0
Identities = 784/792 (98%)
Strand = Plus / Plus
Query: 85 ttgtcgttcaagatgcgtaacttgataactttaaaccatggcaaacttcagcctgtgtct 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3248 ttgtcgttcaagatgcgtaacttgataactttaaaccatggcaaacttcagcctgtgtct 3307
Query: 145 caaacgcttccagatttggaattatacaccagttgcttcgatactttgtctgatagtata 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3308 caaacgcttccagatttggaattatacaccagttgcttcgatactttgtctgatagtata 3367
Query: 205 acatgtgtttnatgntctgcagacattggggcacttgaagttcaacaatatatgaaggac 264
||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3368 acatgtgttctaggtgctgcagacattggggcacttgaagttcaacaatatatgaaggac 3427
Query: 265 gggtctatgaatgttctagcctcattttacgttcaatcatacaacgataaattactatct 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3428 gggtctatgaatgttctagcctcattttacgttcaatcatacaacgataaattactatct 3487
Query: 325 tttattcatttcgatgatatcaacgagttagtctttgttttccaacaaggtgatataata 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3488 tttattcatttcgatgatatcaacgagttagtctttgttttccaacaaggtgatataata 3547
Query: 385 tcagtaacttatgatcctgctaccatggattatcatagcagtaaagttagtattgttggt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3548 tcagtaacttatgatcctgctaccatggattatcatagcagtaaagttagtattgttggt 3607
Query: 445 tctattgatctcggaatagaagctgcagagtggtccgccgatcaagagaccttagcaata 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3608 tctattgatctcggaatagaagctgcagagtggtccgccgatcaagagaccttagcaata 3667
Query: 505 gtaacgttcgaacgtaatgtggtgcttttgagcagacagttggaaccaatcgtagaaacg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3668 gtaacgttcgaacgtaatgtggtgcttttgagcagacagttggaaccaatcgtagaaacg 3727
Query: 565 agtttacaagtcgaagatttgaagatttctaagcatgttacagttggatggggtaaaaaa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3728 agtttacaagtcgaagatttgaagatttctaagcatgttacagttggatggggtaaaaaa 3787
Query: 625 gacactcagtttagaggcaaaggtgcaagagctatggagcgtgaagctctcgaatcgtta 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3788 gacactcagtttagaggcaaaggtgcaagagctatggagcgtgaagctctcgaatcgtta 3847
Query: 685 aaggcttcaggtttagttgggaatgaattaagagatccaacaatgccttacagagttgat 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3848 aaggcttcaggtttagttgggaatgaattaagagatccaacaatgccttacagagttgat 3907
Query: 745 acaggtgcaattaccgaattagatagtcgtaaagtaaaaatatcgtggagaggagactgt 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3908 acaggtgcaattaccgaattagatagtcgtaaagtaaaaatatcgtggagaggagactgt 3967
Query: 805 gagtatttcgctgtcactacgatcgagactgtgaaagatccatcagatgaaaagtagact 864
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3968 gagtatttcgctgtcactacgatcgagactgtgaaagatccatcagatgaaagtaagact 4027
Query: 865 gtcgaaaggaga 876
||||||||||||
Sbjct: 4028 gtcgaaaggaga 4039
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5354
Number of Sequences: 1807
Number of extensions: 5354
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)