BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZE01FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1659 1247 0.0
>3x_Contig1659
Length = 17570
Score = 1247 bits (629), Expect = 0.0
Identities = 717/737 (97%), Gaps = 7/737 (0%)
Strand = Plus / Plus
Query: 87 tatgatttgtgtagaggtagcagtcataagcagagaggaaaatcttatactctcacgtga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12177 tatgatttgtgtagaggtagcagtcataagcagagaggaaaatcttatactctcacgtga 12236
Query: 147 tcagaaacagtagccacttcatcggagtccgaactgataacagttggtctttgatctttt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12237 tcagaaacagtagccacttcatcggagtccgaactgataacagttggtctttgatctttt 12296
Query: 207 atgtcagctttcaaagccaaagcatagctgtatgcgttaacggatggttgtgtcttgtat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12297 atgtcagctttcaaagccaaagcatagctgtatgcgttaacggatggttgtgtcttgtat 12356
Query: 267 tgtaaacccaaagtatgtagttgttttgggaaagttgtagatttgatggttttctttgga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12357 tgtaaacccaaagtatgtagttgttttgggaaagttgtagatttgatggttttctttgga 12416
Query: 327 atgtagcacttagaagaagtgtttaacaatttaatagagttggtgaacattttttcttga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12417 atgtagcacttagaagaagtgtttaacaatttaatagagttggtgaacattttttcttga 12476
Query: 387 tagttttgtgtgtaagtgatgctttttgatgaaatctgttgctattcaatagacttttga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12477 tagttttgtgtgtaagtgatgctttttgatgaaatctgttgctattcaatagacttttga 12536
Query: 447 ttgatgaggtgggagtgaatataatatacaatataaaagaacaacagatgacatccataa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12537 ttgatgaggtgggagtgaatataatatacaatataaaagaacaacagatgacatccataa 12596
Query: 507 gttacaagacactcaactatgaaccagctccttatatatatttttccttgaaccaaagat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12597 gttacaagacactcaactatgaaccagctccttatatatatttttccttgaaccaaagat 12656
Query: 567 cccacatgttctttccaggtttcaagggccattggccgtaacctgattttgtaaatagat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12657 cccacatgttctttccaggtttcaagggccattggccgtaacctgattttgtaaatagat 12716
Query: 627 tagggacattggccgtagag-gggtaataagagtaatattaat-ataataataataatag 684
||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||
Sbjct: 12717 aagggacattggccgtagagtgggtaataagagtaataataataataataataataatag 12776
Query: 685 gactaatatttttttatctttcgtccaga-caataattagtaagggcttttcgacgtatc 743
|||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||
Sbjct: 12777 tactaatatttttttatctttcgtccagaccaataattagtaa-ggcatttcgacgtatc 12835
Query: 744 gaaagcaacaccttggaattcaggagatccaaagccaaaaaaagaacctttattccattg 803
||| |||||||| ||| ||||||||||||||| ||||| |||| ||||| ||||||
Sbjct: 12836 gaagcaaacacctt-gaaatcaggagatccaaag-caaaagaagatactttagtccatt- 12892
Query: 804 gtgggattatgcacttt 820
|| ||||||||||||||
Sbjct: 12893 gttggattatgcacttt 12909
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8810
Number of Sequences: 1807
Number of extensions: 8810
Number of successful extensions: 202
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)