BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZE01RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1774 1233 0.0
>3x_Contig1774
Length = 27771
Score = 1233 bits (622), Expect = 0.0
Identities = 667/678 (98%), Gaps = 3/678 (0%)
Strand = Plus / Minus
Query: 47 atcaaatgatttttaagataaaaaggtagaccaaaataataataccaaacaaacccaatc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16951 atcaaatgatttttaagataaaaaggtagaccaaaataataataccaaacaaacccaatc 16892
Query: 107 gggactaaataagatcccagtaagactcaccgaaccaacatgtcctcacttgacatcaat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16891 gggactaaataagatcccagtaagactcaccgaaccaacatgtcctcacttgacatcaat 16832
Query: 167 gagcaacgtgctcttataaagtctgctcacagatacatctcagagaaactcgaggatcac 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16831 gagcaacgtgctcttataaagtctgctcacagatacatctcagagaaactcgaggatcac 16772
Query: 227 ttctcatccgagtttttaccaaaggctcttgtgatttgtggatctggtttaagtggaatc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16771 ttctcatccgagtttttaccaaaggctcttgtgatttgtggatctggtttaagtggaatc 16712
Query: 287 tcaaccaagatcgctgatgaaccaaagccattgattctgtcttattcgaccattcctggc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16711 tcaaccaagatcgctgatgaaccaaagccattgattctgtcttattcgaccattcctggc 16652
Query: 347 ttcaaagtcagcaccgtacctggacatagtggtgagttgatctttggctacatgaacggt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16651 ttcaaagtcagcaccgtacctggacatagtggtgagttgatctttggctacatgaacggt 16592
Query: 407 gcgcctgtcgtcttaatgaatggccgtttgcattcttatgagggccattccttagcagaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16591 gcgcctgtcgtcttaatgaatggccgtttgcattcttatgagggccattccttagcagaa 16532
Query: 467 acagtgcatcctatccgtgcattgcacttgttggggtcaatcaatgtcttgatcgtaaca 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16531 acagtgcatcctatccgtgcattgcacttgttggggtcaatcaatgtcttgatcgtaaca 16472
Query: 527 aatgcagccggtggtatcaatgcctcctttaaggctggggatttaatgtgtgtctacgac 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16471 aatgcagccggtggtatcaatgcctcctttaaggctggggatttaatgtgtgtctacgac 16412
Query: 587 catatcaattttcccaggattatgcgggttccattctctaaggggagctaattttgacga 646
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 16411 catatcaa-tttcccaggattatgcgggttccatcctctaaggggagctaattttgacga 16353
Query: 647 atttgggccaagattcttgggcttccattgatgcttatgacttgggaactaccgtagcta 706
|||||||||||||||||| |||| ||| ||||||||||||||| |||||||| |||||
Sbjct: 16352 atttgggccaagattctt-ggctaccagtgatgcttatgactt-ggaactacgtaagcta 16295
Query: 707 ttgttttctaaaaaaaaa 724
|||||||| || ||||||
Sbjct: 16294 ttgttttcaaagaaaaaa 16277
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6896
Number of Sequences: 1807
Number of extensions: 6896
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)